PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g046200.1 | ||||||||
Common Name | MTR_1g046200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 325aa MW: 38127.8 Da PI: 5.2475 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.5e-17 | 8 | 97 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ s + r+++p+ f++ + +k + k+ +l+d++gr W vk r +++ ++ +GWk+F ++n L+e Df+vF++++++ f ++k+ Medtr1g046200.1 8 FFKVF--STEKHTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKA--RLIGDELYFDGGWKQFREENSLEEDDFLVFTHIENTVF--RFKI 97 89999..777777889*******777545445579***************..999999*************************9998888..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-18 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.578 | 6 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.61E-15 | 6 | 98 | No hit | No description |
SMART | SM01019 | 8.3E-13 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-14 | 8 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.259 | 285 | 321 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAKDYPDFFK VFSTEKHTER MRIPNAFVNL MRSKRKVIKD FILRDRRGRD WHVKARLIGD 60 ELYFDGGWKQ FREENSLEED DFLVFTHIEN TVFRFKILEL SSMCEKKKVS VVEENNNMED 120 EEEVNDGDDD DEDDDYEYDA AAAADDDGDD DDENERMYKE ISRSKHQHCR TCCKCKAGNI 180 GSSSARSKLE DDEIDAEIYI QPGNPHFIAK YIHSRPNELF IPKNVIKDFC LCFTKHVTLE 240 CCHCKDIQSN DLAAYHHILP QISTIHIEKR GQVRTWRDGR VRVLGWEDFC RKSKITENDS 300 CLCEIVLRED GTIRILRVHV VRKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g046200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467138.1 | 0.0 | B3 domain-containing protein REM21 isoform X1 | ||||
Refseq | XP_024631064.1 | 0.0 | B3 domain-containing protein REM21 isoform X1 | ||||
TrEMBL | A0A072VGJ6 | 0.0 | A0A072VGJ6_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | XP_004497762.1 | 1e-126 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g046200.1 |
Entrez Gene | 25483040 |
Publications ? help Back to Top | |||
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