PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g046200.1
Common NameMTR_1g046200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 325aa    MW: 38127.8 Da    PI: 5.2475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g046200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-17897196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ffkv+  s    + r+++p+ f++ + +k +  k+ +l+d++gr W vk   r  +++ ++ +GWk+F ++n L+e Df+vF++++++ f  ++k+
  Medtr1g046200.1  8 FFKVF--STEKHTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKA--RLIGDELYFDGGWKQFREENSLEEDDFLVFTHIENTVF--RFKI 97
                     89999..777777889*******777545445579***************..999999*************************9998888..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-19499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-18499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.5786101IPR003340B3 DNA binding domain
CDDcd100177.61E-15698No hitNo description
SMARTSM010198.3E-138101IPR003340B3 DNA binding domain
PfamPF023621.6E-14897IPR003340B3 DNA binding domain
PROSITE profilePS508636.259285321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKDYPDFFK VFSTEKHTER MRIPNAFVNL MRSKRKVIKD FILRDRRGRD WHVKARLIGD  60
ELYFDGGWKQ FREENSLEED DFLVFTHIEN TVFRFKILEL SSMCEKKKVS VVEENNNMED  120
EEEVNDGDDD DEDDDYEYDA AAAADDDGDD DDENERMYKE ISRSKHQHCR TCCKCKAGNI  180
GSSSARSKLE DDEIDAEIYI QPGNPHFIAK YIHSRPNELF IPKNVIKDFC LCFTKHVTLE  240
CCHCKDIQSN DLAAYHHILP QISTIHIEKR GQVRTWRDGR VRVLGWEDFC RKSKITENDS  300
CLCEIVLRED GTIRILRVHV VRKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g046200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467138.10.0B3 domain-containing protein REM21 isoform X1
RefseqXP_024631064.10.0B3 domain-containing protein REM21 isoform X1
TrEMBLA0A072VGJ60.0A0A072VGJ6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004497762.11e-126(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-11B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]