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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g045610.1 | ||||||||
Common Name | MTR_1g045610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 30264.1 Da PI: 9.6357 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+d+v+++G g+W+++ar g++R +k+c++rw +yl Medtr1g045610.1 23 KGPWTAEEDRLLIDYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 70 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Medtr1g045610.1 76 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.316 | 18 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.24E-30 | 22 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-12 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.928 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MYWRGVMAGQ IGHGIMEEEV WRKGPWTAEE DRLLIDYVRL HGEGRWNSVA RLTGLKRNGK 60 SCRLRWVNYL RPDLKRGQIT PQEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKAKNPFD AAEKAKNRFL RKQLFHQQQQ QQQLQQQQQQ QQLQFNLDMK GVMSMFEENN 180 SHRVPYISQA RQEIFNMYPN TTEDQGYFML NGNSSVPNAT EDDTLLDGLW NLDDVQGNFS 240 VANATNKAGL YNLVAPYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g045610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174312 | 0.0 | AC174312.19 Medicago truncatula clone mth2-157b7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590181.2 | 0.0 | transcription factor MYB24 | ||||
TrEMBL | G7I6P8 | 0.0 | G7I6P8_MEDTR; Myb transcription factor | ||||
STRING | AES60432 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-86 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g045610.1 |
Entrez Gene | 11428579 |
Publications ? help Back to Top | |||
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