PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g045470.1 | ||||||||
Common Name | MTR_1g045470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37435.1 Da PI: 6.1945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.8 | 3.6e-22 | 12 | 137 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 Ptd+el++++L +k+++k+l+ + +i e d++ + +Pw++ + + +++ k++yfF++ +kk+at++r r++ g+W+ + k++++k Medtr1g045470.1 12 TPTDDELLQQFLYNKIHNKPLPNHITILEHDLFGTakNPWEIWEefgtSNSNRGKDLYFFTTLKKKSATSSRVVRTIGLGRWEGEDSGKNIFAK 105 6*******************999888*****9987669****742443333356689***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ g+kk + f k + +++ W++hey+l Medtr1g045470.1 106 dKNQILGMKKRFRFEK--SDTSQDGGWILHEYSL 137 666779********85..5555699*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.052 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-14 | 12 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.72E-25 | 12 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MALNSSSDKV ITPTDDELLQ QFLYNKIHNK PLPNHITILE HDLFGTAKNP WEIWEEFGTS 60 NSNRGKDLYF FTTLKKKSAT SSRVVRTIGL GRWEGEDSGK NIFAKDKNQI LGMKKRFRFE 120 KSDTSQDGGW ILHEYSLHNS LISNPLDNNY VLCRFRKNCT HLPVSKNIVA QDKPRKIVVP 180 EPAAITIPGK RKYIIYEEPT KESNGTVVNT KSHRKEKEKY VEWTKENFVL ALEAPTKSEN 240 NNVWLKENID QNPNNQLNNG KNKIEDDGDV NTSKEEDGDA IMSWPELFSL QLREMNEGCL 300 IEEEDVPMIS NQFYKDLLSE NININ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g045470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148756 | 0.0 | AC148756.2 Medicago truncatula clone mth2-22d18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590172.1 | 0.0 | NAC domain-containing protein 30 | ||||
TrEMBL | G7I6N9 | 0.0 | G7I6N9_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES60423 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-15 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g045470.1 |
Entrez Gene | 11421210 |
Publications ? help Back to Top | |||
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