PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g045470.1
Common NameMTR_1g045470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 326aa    MW: 37435.1 Da    PI: 6.1945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g045470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.6e-22121378128
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       Ptd+el++++L +k+++k+l+ + +i e d++ +  +Pw++ +    + +++ k++yfF++ +kk+at++r  r++  g+W+   + k++++k
  Medtr1g045470.1  12 TPTDDELLQQFLYNKIHNKPLPNHITILEHDLFGTakNPWEIWEefgtSNSNRGKDLYFFTTLKKKSATSSRVVRTIGLGRWEGEDSGKNIFAK 105
                      6*******************999888*****9987669****742443333356689***********************************99 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++  g+kk + f k  + +++   W++hey+l
  Medtr1g045470.1 106 dKNQILGMKKRFRFEK--SDTSQDGGWILHEYSL 137
                      666779********85..5555699*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.0525158IPR003441NAC domain
PfamPF023652.3E-1412137IPR003441NAC domain
SuperFamilySSF1019417.72E-2512156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALNSSSDKV ITPTDDELLQ QFLYNKIHNK PLPNHITILE HDLFGTAKNP WEIWEEFGTS  60
NSNRGKDLYF FTTLKKKSAT SSRVVRTIGL GRWEGEDSGK NIFAKDKNQI LGMKKRFRFE  120
KSDTSQDGGW ILHEYSLHNS LISNPLDNNY VLCRFRKNCT HLPVSKNIVA QDKPRKIVVP  180
EPAAITIPGK RKYIIYEEPT KESNGTVVNT KSHRKEKEKY VEWTKENFVL ALEAPTKSEN  240
NNVWLKENID QNPNNQLNNG KNKIEDDGDV NTSKEEDGDA IMSWPELFSL QLREMNEGCL  300
IEEEDVPMIS NQFYKDLLSE NININ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g045470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487560.0AC148756.2 Medicago truncatula clone mth2-22d18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590172.10.0NAC domain-containing protein 30
TrEMBLG7I6N90.0G7I6N9_MEDTR; NAC transcription factor-like protein
STRINGAES604230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-15NAC domain containing protein 83
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]