PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g035620.1
Common NameMTR_1g035620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 415aa    MW: 48349.7 Da    PI: 10.1328
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g035620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-123344081796
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++  +f+++h++    +k +++++  g+sW vk++y  + +r  + +GW++F ++ +Lk gD++ +kl+++++f ++v++
  Medtr1g035620.1 334 YIQHEFFKRHKEC--HGKFVQFTN-GGKSWPVKVQYYERTCR--FYAGWRKFKEDCELKIGDTCKLKLIDDKKFVFKVSI 408
                      5777888888533..333455555.9********66666655..679***********************9*99777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-13799IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14899IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.061899IPR003340B3 DNA binding domain
CDDcd100176.58E-10996No hitNo description
SMARTSM010195.5E-7999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-11174280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-13176277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-6179277No hitNo description
PROSITE profilePS508638.952180281IPR003340B3 DNA binding domain
SMARTSM010190.16181281IPR003340B3 DNA binding domain
SMARTSM010190.0032322412IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-14331410IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-12332408IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-10335409IPR003340B3 DNA binding domain
CDDcd100172.82E-10338410No hitNo description
PROSITE profilePS508639.968357412IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLHHPEEFL KIVQNHELHK GELRVPKKFV EKYWKRIPNP VILRLPNGAQ KKIFWVERDG  60
NIWLKRNWEN FAKSLKRGYA LVFKYIGGPY FKVKIFGHNT LEKDYSNIKF IDESCEGREE  120
VQEVVELSDD NVNSAGTSQR RKSGKRKINQ QKIKGSKRGM IKKTKKCSTI SERDNNENPS  180
FELDLSQSYA HGYTLRIPSD FSRTYLNENL KGSSASIRFG ENMPMKVKVM FQDVKYNRTC  240
FVTNGWKPFA KKYNLQVGNV CKFVMTQLHP LSFTITITQA KGYEGIISCD DNIGKKRGIE  300
GSSRSCHVLP TDLEGGIVME PNTIEIRVNS TYPYIQHEFF KRHKECHGKF VQFTNGGKSW  360
PVKVQYYERT CRFYAGWRKF KEDCELKIGD TCKLKLIDDK KFVFKVSIER MQHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g035620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631481.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A072VG970.0A0A072VG97_MEDTR; B3 DNA-binding domain protein
STRINGXP_004498233.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-11B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]