PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g035520.1
Common NameMTR_1g035520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 384aa    MW: 43358.9 Da    PI: 6.183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g035520.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.2e-133013761290
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + +++vlp + +++hg+ + +s++l+       +W v ++y+ + ++ ++tkGW+eFv++ ++k+gD+++F+ ++ ++ 
  Medtr1g035520.1 301 SDKLVVLPSELLKKHGIFSGNSVELR--V-GEGTWFVDVSYNEHLDHGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNH 376
                      44578**********88866665555..4.4589**************************************7765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.02871161IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1274159IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1182169IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-687159No hitNo description
PROSITE profilePS5086310.673290383IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-16292382IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-6293381IPR003340B3 DNA binding domain
CDDcd100178.91E-14293382No hitNo description
SuperFamilySSF1019361.29E-13293382IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-10300378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSQLCVDLHV DTQYISLLFT TAQSSLLHKA TCLFNKTALA ALTMGVVGKL KECISIYMFN  60
NANFNTKNST SSIQIYTHMF LKTCLQMIPR NFAERYWNDV PNPISLKLPN GSACKMNWVQ  120
RGDGIWLQNW KRFAWSLRSG DLLVFQYKGG SDFHVIILDD SKLEIDYSSM RCNDDQANTK  180
ESDDDDDDDD DYECVEIPSD SENTKIPLKK KRTNSNGIAT TATTPQGSNI HMRKTNINAS  240
QQKVSENQGV QEKSETTPVK DMEYAGNFGD GISKSCTKTY GFRDSVSLNL HEMFKVFITS  300
SDKLVVLPSE LLKKHGIFSG NSVELRVGEG TWFVDVSYNE HLDHGWFTKG WQEFVRDCKV  360
KTGDTCLFET IDVQNHVFKV SIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g035520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630376.11e-110B3 domain-containing protein REM16
TrEMBLA0A072VG920.0A0A072VG92_MEDTR; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-17B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]