PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g034210.2 | ||||||||
Common Name | MTR_1g034210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 325aa MW: 36952.5 Da PI: 9.2162 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 9 | 98 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l+ + +l+s++l++p +f+++hg + s+ tl+ + g +W++ l +k ++++ + +GW++Fv+ + g +vF ++grs+f +++fr+ Medtr1g034210.2 9 KLIFPTTLQSKQLRIPDNFLRKHGDQ--LSTVATLTIPGGSVWRLGL--KKVDNSICFVDGWQDFVQRYSIGIGYLLVFIYEGRSNF--IIHIFRT 98 566778889999***********987..8999999************..**********************************9999..9999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 9.84E-18 | 5 | 97 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-19 | 5 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-21 | 5 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.562 | 6 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-14 | 7 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-13 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-5 | 254 | 324 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-6 | 260 | 324 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MPLLPSFHKL IFPTTLQSKQ LRIPDNFLRK HGDQLSTVAT LTIPGGSVWR LGLKKVDNSI 60 CFVDGWQDFV QRYSIGIGYL LVFIYEGRSN FIIHIFRTAE LNYDSTMKSR TEGPFYEAYN 120 YVFEGIEDID SFDFLDSAPS NPTGALQGKD STGCMDQLIP ADNHIQKRQE NKDTKKTSRK 180 KRGSRKSDPS AQEASTENDE EAERKRDTKK TSRKKRKSDL SAQEASTENV AYESASARVR 240 HNVSDEERER AMNEANAFEP TNPYCRVSLR PSYLYRGCIM YLPTKFRANL KGVSGFIPLQ 300 TSDGEKQWRV RCLDNEGRIK LSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-32 | 232 | 324 | 17 | 107 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-32 | 232 | 324 | 17 | 107 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g034210.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466716.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A072VGN2 | 0.0 | A0A072VGN2_MEDTR; B3 domain transcription factor VRN1-like protein | ||||
STRING | XP_004498177.1 | 1e-123 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g034210.2 |
Entrez Gene | 25482671 |
Publications ? help Back to Top | |||
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