PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

MYB_related

Protein Properties

Length: 245aa MW: 26300 Da PI: 10.3905

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g033620.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3e-08	14	50	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Medtr1g033620.1 14 LFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 50 6778899*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-10	13	56	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-11	14	53	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-6	14	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-5	15	49	IPR009057	Homeodomain-like
CDD	cd00167	4.95E-4	21	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSDTPYATAL KALLFLLGLD KYGKGDWRSI SRNFVVTRTP TQVASHAQKY FIRLNSMNKD 60 RRRSSIHDIT SVNNGDVSTP QGPITGQTNG SSGNSAGKSV KQAVPSTTGL PGAGMYAAPT 120 IGQPIGGPLV SAVGTPVNLS APPHMAYGIR APVPGTVVSG APVNMVPMTY PMPHHTSAPH 180 RLLNCYFVKL RSEEVKNQHE NKSGVGEMRM LRWICGKTKR IGLETTTLES WDHTYSRKDG 240 VNEA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.26038	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g033620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135012	0.0	BT135012.1 Medicago truncatula clone JCVI-FLMt-16A6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024631467.1	1e-118	transcription factor SRM1
Refseq	XP_024631489.1	1e-118	transcription factor SRM1
Refseq	XP_024631512.1	1e-118	transcription factor SRM1
Swissprot	Q9FNN6	2e-67	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A072VFX5	0.0	A0A072VFX5_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRING	XP_004513249.1	1e-107	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4694	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-59	MYB family protein

Link Out ? help Back to Top
Phytozome	Medtr1g033620.1
Entrez Gene	25482625

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]