PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g032600.1
Common NameMTR_1g032600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 356aa    MW: 39703 Da    PI: 9.2689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g032600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-0978126153
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      r++ +  rE+ RRdr+N+ f++L +++ ++     ++++Ka+i +++++ +k+
  Medtr1g032600.1  78 RKVQKADREKIRRDRLNDHFHQLGTVIDPD----RPRNDKATIITETIQVLKD 126
                      5677889********************997....799***********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.23377127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1178146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-778126No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1078148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-778126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-583133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRVLAFLPFP LKINNNTSIV NHFTGMQHMI NQWKPPPPPL NTSKTPSLTA EDSPPLPITN  60
RRERSEMVEV GDPTVVARKV QKADREKIRR DRLNDHFHQL GTVIDPDRPR NDKATIITET  120
IQVLKDITSE VDRLKTEHKS LSEESRELIQ EKTELREEKA SLKSDIENLN SQYQQRVGVM  180
PPWTAIDHSV VMSSPYTYPV PMPMPIPAGP VSIHPPPMQP FPYFGNQNPG HIPSLSSMYI  240
PFSAPAIPPM EMASAQYPST SHVFSRKESR SKSLGHRRRP SVAERCSVSP DVATELELKM  300
PGSSTQQDCT SRGKKEKHSV MSDRIIVDES ASSRYSASQG LQDSSNSVSN TPKAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.25633e-51flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g032600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466599.10.0transcription factor bHLH121
RefseqXP_024632007.10.0transcription factor bHLH121
SwissprotQ9LT232e-67BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A072VR730.0A0A072VR73_MEDTR; Putative transcription factor bHLH family
STRINGXP_004498238.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-66bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]