PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g029070.1 | ||||||||
Common Name | MTR_1g029070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 18748.9 Da PI: 5.0124 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 114.7 | 4.7e-36 | 51 | 144 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++++ lPi n++rim+++lP akis+dak t+q cvs+f++ +t+ea +kc++e rk i+g+d++ a++ lGfedyv pl++ l++yr+ e+ Medtr1g029070.1 51 KNEELCLPIRNLTRIMRRALPLYAKISQDAKATTQLCVSDFMGIITTEAVEKCNEESRKIISGEDIIRAMGRLGFEDYVGPLSLLLQNYRNHEA 144 677889************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-33 | 48 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.51E-26 | 53 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-16 | 57 | 120 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.4E-6 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 2.4E-6 | 103 | 121 | No hit | No description |
PRINTS | PR00615 | 2.4E-6 | 122 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MERGSPSSNN NRSAHSSSVL LQAGSPSQNN ESPRTENIDV EIEKQDLPPT KNEELCLPIR 60 NLTRIMRRAL PLYAKISQDA KATTQLCVSD FMGIITTEAV EKCNEESRKI ISGEDIIRAM 120 GRLGFEDYVG PLSLLLQNYR NHEAQFSGMS TACGFNMDGS GTGGSSSGNG QY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-29 | 50 | 140 | 6 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g029070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466407.1 | 1e-125 | transcriptional activator hap3 | ||||
TrEMBL | A0A072VGA7 | 1e-124 | A0A072VGA7_MEDTR; Nuclear transcription factor Y protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21178 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 6e-33 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g029070.1 |
Entrez Gene | 25482401 |
Publications ? help Back to Top | |||
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