PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g023260.1 | ||||||||
Common Name | MTR_1g023260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | DBB | ||||||||
Protein Properties | Length: 274aa MW: 30106.6 Da PI: 7.0631 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 2.9e-07 | 4 | 43 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+ ++++e++lfC+ ++ lC dC H+ H Medtr1g023260.1 4 QCDVCNKNEASLFCTADEAALCIDCDHRVHHAnklaskhH 43 7***************************964447777744 PP | |||||||
2 | zf-B_box | 22.5 | 2.4e-07 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++e ++ C++++ lC+dC +++H+ H Medtr1g023260.1 54 QHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVneltqkH 95 5689*****************************434555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.035 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.36E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.7E-5 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.911 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.3E-6 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.62E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MKIQCDVCNK NEASLFCTAD EAALCIDCDH RVHHANKLAS KHHRLALHNP TPKQHPLCDI 60 CQERRAFVLC KQDRAILCKD CDSSIHSVNE LTQKHDRFLL TGIKISTTNS SSSSSSSTPS 120 SATTKSNHIP SSSLIEKSTT PSPTSMEEGS GGSTISQYLI ETLPGWQVDD FLDSSSVPFA 180 FSKGDELFNA GIEENLDSFF PNNNMGIWVP QAPPPSLYSS SQIMMGQSET TKKGSNNKST 240 INKSRLRDDH DSNIFTVPQI SPVANSKRTR YLW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16058 | 0.0 | flower| root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g023260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051898 | 0.0 | BT051898.1 Medicago truncatula clone MTYF5_F6_F7_F81G-E-22 unknown mRNA. | |||
GenBank | BT143086 | 0.0 | BT143086.1 Medicago truncatula clone JCVI-FLMt-11J17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589351.1 | 0.0 | B-box zinc finger protein 21 | ||||
Refseq | XP_024631182.1 | 0.0 | B-box zinc finger protein 21 | ||||
Refseq | XP_024631183.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-69 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | B7FII1 | 0.0 | B7FII1_MEDTR; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | AES59602 | 0.0 | (Medicago truncatula) | ||||
STRING | AES59605 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-68 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g023260.1 |
Entrez Gene | 11428057 |