PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021500.2 | ||||||||
Common Name | MTR_1g021500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 440aa MW: 48676.8 Da PI: 9.1104 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.5e-12 | 28 | 92 | 3 | 72 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 +++++s+ + ++ l lpk+f ++ + k+ + ++l+ + g +W++ l + ++g++++t+GW++Fvk++ Medtr1g021500.2 28 TQFLRSNDFDQQ-LALPKTFSNNVK--KKLPENVVLKGPGGVTWNIGL--TSRDGTFYFTQGWEQFVKDH 92 566677777665.*******85555..458889***************..*******************9 PP | |||||||
2 | B3 | 34.4 | 3.8e-11 | 298 | 378 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++ ps+v k+ +++p+k + +h + +s++++l+ ++W k++y + ++ lt+GWk F+ +n+L+e D+++Fk g Medtr1g021500.2 298 VTMRPSHVYKRFFVSFPNKWILNHLAP--SSQDVILRM-GKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAG 378 5789*****************999655..566788776.779********77777778**********************9554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-14 | 22 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.966 | 25 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.27E-11 | 26 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-14 | 26 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-9 | 27 | 92 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-4 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-16 | 293 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-14 | 296 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.4E-4 | 296 | 389 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.896 | 296 | 394 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-9 | 298 | 378 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.20E-14 | 299 | 392 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MGLQNGGGCS RSWEEDIYWT HFQFIHFTQF LRSNDFDQQL ALPKTFSNNV KKKLPENVVL 60 KGPGGVTWNI GLTSRDGTFY FTQGWEQFVK DHFFERERLP FSVEKAAAYF VRKCGHAEAA 120 AQTEQGGGCS SKGRETNNSV DEVNTPSNGV DEGVSHEKSL HLNSIRVPFA VPSETTNGKT 180 SNAAVESATP EQLMSDAAVT ETEPTAVPSQ TTGKRTRRPV YAVPSVPSKK RGRPPRTSNS 240 QEKALNWVTD AGPAPASPKG SPKTQELYTS NRRPVTKDEI EKTLQVAQAA CTEESLLVTM 300 RPSHVYKRFF VSFPNKWILN HLAPSSQDVI LRMGKNEWLG KYCYHNIRNN GGLTGGWKYF 360 ALDNNLEEFD VCLFKPAGHL HDILILEMSI FRVVEEITPL TAVHSPGKKR GLSSTGKKRG 420 VKRTLTSAAQ TELEAIEGA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3372 | 0.0 | flower| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142610 | 0.0 | BT142610.1 Medicago truncatula clone JCVI-FLMt-21M9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499104.2 | 0.0 | B3 domain-containing protein REM16-like | ||||
TrEMBL | G7I584 | 0.0 | G7I584_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59536 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021500.2 |
Entrez Gene | 11414255 |
Publications ? help Back to Top | |||
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