PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021440.1
Common NameMTR_1g021440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 400aa    MW: 44907.6 Da    PI: 8.0701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.5e-2029112898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++ ++l lpk+f ++ +  k+ +  +tl+ +sg +W++ l  + +++++++ +GW++Fvk++ Lke+Df+vFk++g+s f   v +f+
  Medtr1g021440.1  29 TTDFQ-QQLALPKTFSDNLK--KKLPENVTLKGPSGAVWDIGL--TTRDNTVYFVGGWERFVKDHSLKENDFLVFKYNGESLF--EVLIFD 112
                      44444.46*******85555..558889***************..99999***************************998888..777776 PP
2B350.34.4e-16281373196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k+ ++ +v   ++l +p +f  +h   ++++++++l++++g++W+ +    ++   +++l +GW +Fv+an++k gD++vF+l+++ e   +
  Medtr1g021440.1 281 FVKIIKTFNVDGPRILNVPHQFSIAHL--PNGKIKIILRNLKGEQWTANSVPrSRVHTSHTLCGGWMSFVRANNIKLGDVCVFELINDCEL--R 370
                      778888888999999*******99994..346789**************94333333449999**********************997666..4 PP

                      EEE CS
               B3  94 vkv 96 
                      v+v
  Medtr1g021440.1 371 VRV 373
                      444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-2418113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.22721114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-2522112IPR015300DNA-binding pseudobarrel domain
CDDcd100179.95E-2222112No hitNo description
SMARTSM010191.7E-2023114IPR003340B3 DNA binding domain
PfamPF023621.6E-1728112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21272374IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-22274375IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-19279373No hitNo description
SMARTSM010196.7E-13281377IPR003340B3 DNA binding domain
PfamPF023628.7E-13281372IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183281377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS  60
GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA  120
TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV  180
PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEGNSR  240
EGALDLRASN KEHSEAAQSR LSSAKDEKKL AQSFTSTFPY FVKIIKTFNV DGPRILNVPH  300
QFSIAHLPNG KIKIILRNLK GEQWTANSVP RSRVHTSHTL CGGWMSFVRA NNIKLGDVCV  360
FELINDCELR VRVAEVDEDG LVSEVQKEGI DHQNGSCET*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.126510.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579780.0AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589279.10.0B3 domain-containing protein REM16 isoform X1
TrEMBLG7I5780.0G7I578_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-41B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]