PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021400.1
Common NameMTR_1g021400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 369aa    MW: 41115.2 Da    PI: 8.4617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.9e-2031120398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +++++  ++ +++l lpk+f ++ +  k+ +  +tl+ +sg +W++ l  + +++++++ +GW++Fv+++ Lke+Df+vFk++g+s f   v +
  Medtr1g021400.1  31 TQFLQTTTNFQQQLALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTRDNTVYFVDGWQQFVNDHSLKENDFLVFKYNGESLF--EVLI 118
                      4555666667778*******85555..558889***************..9999****************************998888..8888 PP

                      E- CS
               B3  97 fr 98 
                      f+
  Medtr1g021400.1 119 FD 120
                      76 PP
2B350.73.3e-16256341187
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+l+  +v+ s+ l++p +f ++h      ++++tl++++g+ W+v+     k++   + + +GW  Fv++ng++ gD+++F+l+ +
  Medtr1g021400.1 256 FVKILKAGNVGGSRTLRIPYHFSAAHLP--DFKIEVTLRNSKGKCWTVNSVPcAKGK-IiHSFCGGWMAFVRDNGVNFGDTCIFELVTN 341
                      899999*****************99953..36789**************95534444.359999*********************8754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2326122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.74929122IPR003340B3 DNA binding domain
SMARTSM010192.7E-1930122IPR003340B3 DNA binding domain
CDDcd100175.47E-2130120No hitNo description
PfamPF023621.2E-1731120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2331121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-23248351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-25249351IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-21254349No hitNo description
SMARTSM010191.1E-13256352IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197256352IPR003340B3 DNA binding domain
PfamPF023627.8E-14256341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGGRDDGQNW DGSRSWEEDI YWTHFQFIHF TQFLQTTTNF QQQLALPKTF SDNLKKKLPE  60
NVTLKGPSGV VWNIGLTTRD NTVYFVDGWQ QFVNDHSLKE NDFLVFKYNG ESLFEVLIFD  120
GNSFCEKATS YFVGKCGHAQ TEQGDSKAKD NNTSAFNAGV ESASPQVADV VAKTTPAAVP  180
SQTTSKRTKK KPVIEVTPVQ TKKRGRPPKS DDSGEKLLRD LVACNKEHSE ASTLDRIRKE  240
DEKKIAESFT SSFPYFVKIL KAGNVGGSRT LRIPYHFSAA HLPDFKIEVT LRNSKGKCWT  300
VNSVPCAKGK IIHSFCGGWM AFVRDNGVNF GDTCIFELVT NYVMQVYIFG SGKEGADNQN  360
GHVKLDSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182030.0flower| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0536380.0BT053638.1 Medicago truncatula clone MTYFT1G-K-15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589277.10.0B3 domain-containing protein REM16
TrEMBLG7I5760.0G7I576_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-50B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]