PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021360.1
Common NameMTR_1g021360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 479aa    MW: 54490.6 Da    PI: 9.1049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-1927113396
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++++ +l+++ l lpk+f ++ ++k   +  +tl+ +sg +W++ l  + ++++++ t+GW++Fvk++ Lk++Df+vFk++g+s f   v +
  Medtr1g021360.1  27 TQFLQPTHLEQQ-LALPKTFSDNLKNK--LPANVTLKGPSGVVWDIGL--TTRDDTIYSTDGWQQFVKDHSLKQNDFLVFKYNGESLF--EVLI 113
                      556677777775.*******9555544..8899***************..9*******************************998888..5555 PP
2B358.31.4e-181932721398
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++l lpk+f ++ +  k+ +  +tl+ +sg +W++ l  + +++ +++ +GWk+F k++ Lk++Df+vFk++g+s f   v +f+
  Medtr1g021360.1 193 EQQLALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTRDDIVYFVDGWKRFIKDHSLKQNDFLVFKYNGKSLF--EVLIFD 272
                      4579******85555..558889***************..999999**************************998877..777776 PP
3B349.29.3e-16374465195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k  ++ +v   ++l +p +f ++h   ++++++++l +++g++W+v+    ++    ++l +GW +Fv+ n++k+gD+++F+l+++ e   +
  Medtr1g021360.1 374 FVKMIKTFNVDGPRILNVPHQFSKAHL--PNRKIKIILHNLKGEQWTVNSVPtTRVNTDHTLCGGWVNFVRGNNIKVGDVCIFELIHECEL--R 463
                      5666667778888899*******9995..347789**************955444445599999*********************996655..4 PP

                      EE CS
               B3  94 vk 95 
                      v+
  Medtr1g021360.1 464 VR 465
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-2222115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.38124117IPR003340B3 DNA binding domain
CDDcd100171.16E-1725114No hitNo description
Gene3DG3DSA:2.40.330.101.4E-2226115IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.1E-1826117IPR003340B3 DNA binding domain
PfamPF023625.1E-1627114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-22180273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.495181274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-22183272IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-18183272No hitNo description
SMARTSM010192.7E-17184274IPR003340B3 DNA binding domain
PfamPF023622.0E-15193272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-21366466IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-21367466IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-16372466No hitNo description
PROSITE profilePS5086313.267374470IPR003340B3 DNA binding domain
SMARTSM010193.2E-11374470IPR003340B3 DNA binding domain
PfamPF023621.3E-12375465IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGGTQNSSSR SWEEDIYWTH FQFIRFTQFL QPTHLEQQLA LPKTFSDNLK NKLPANVTLK  60
GPSGVVWDIG LTTRDDTIYS TDGWQQFVKD HSLKQNDFLV FKYNGESLFE VLIFHGESFC  120
EKAASYFILE RGQAHTGQRG RKAKDTNTSV EEVNTPSNGS VECGLPEKSW EEDIYWTHFQ  180
FIHFTQFLRA DFEQQLALPK TFSDNLKKKL PENVTLKGPS GVVWNIGLTT RDDIVYFVDG  240
WKRFIKDHSL KQNDFLVFKY NGKSLFEVLI FDGDSFCEKA ASYFVGKCGN AQIEQGGRKA  300
KDTNKSVSPE QFLADAVPSQ TNGKRTKKRP VNEVTPLQTK RGRRPKAEAA LSKLSSSHAE  360
KKIAESFTSS FPYFVKMIKT FNVDGPRILN VPHQFSKAHL PNRKIKIILH NLKGEQWTVN  420
SVPTTRVNTD HTLCGGWVNF VRGNNIKVGD VCIFELIHEC ELRVRVAEVG KDDSRLEN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.224200.0flower| leaf| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589274.20.0B3 domain-containing protein REM16
TrEMBLG7I4K80.0G7I4K8_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-47B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]