PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021350.1 | ||||||||
Common Name | MTR_1g021350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 349aa MW: 39293.1 Da PI: 10.0153 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.8 | 5.4e-20 | 27 | 110 | 8 | 97 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 s ++ +++l lpk+f ++ + k+ + +tl+ +sg +W++ l + + +++++ +GW++Fvk++ Lke+Df+vFk++g+s f v +f Medtr1g021350.1 27 STTHFQQQLALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTRNDTVYFMDGWQRFVKDHSLKENDFLVFKYNGESLF--EVLIF 110 45556678*******85555..558889***************..88888899999*********************998888..66666 PP | |||||||
2 | B3 | 40.9 | 3.8e-13 | 250 | 319 | 22 | 96 |
H.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 22 faeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ++++++++l +++g++W+v+ +++ +++l++GW v+an +k gD+++F+l+++se +v++ Medtr1g021350.1 250 H------LPKGNIQIILHNLKGERWTVNAVAiakGRHKTSHILSAGWITSVRANSIKIGDVCIFELIDESEL--RVRI 319 2......2456789**************966666777777**************************986665..6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-23 | 18 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.763 | 20 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-24 | 21 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-20 | 21 | 111 | No hit | No description |
SMART | SM01019 | 3.0E-18 | 22 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-17 | 27 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.025 | 232 | 323 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.63E-10 | 240 | 319 | No hit | No description |
SuperFamily | SSF101936 | 4.9E-12 | 247 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-11 | 249 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-10 | 250 | 319 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.715 | 257 | 323 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGSGRRSREE EIYWNHFQFI HFTLFLSTTH FQQQLALPKT FSDNLKKKLP ENVTLKGPSG 60 VVWNIGLTTR NDTVYFMDGW QRFVKDHSLK ENDFLVFKYN GESLFEVLIF NGESLCEKAA 120 SYFVLECGQK SILLPNGGVE CASPEKFRRT RTPFAVPFET TNGKTFNAGI ESASSKKCMA 180 DALTKTTTIQ FPFQPTGKRT KKKPVKEAVP VKTKKRGRPP KDGNSSKRAL DLKACNKEHS 240 ECTLWISMAH LPKGNIQIIL HNLKGERWTV NAVAIAKGRH KTSHILSAGW ITSVRANSIK 300 IGDVCIFELI DESELRVRIA EVGKDGLDYQ VGKEGLDHQN EHMKLNSM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13686 | 1e-129 | flower| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 0.0 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. | |||
GenBank | AC202488 | 0.0 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589271.2 | 1e-150 | B3 domain-containing protein REM16 | ||||
TrEMBL | G7I4K7 | 0.0 | G7I4K7_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59524 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-43 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021350.1 |
Entrez Gene | 11420401 |
Publications ? help Back to Top | |||
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