PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021350.1
Common NameMTR_1g021350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 349aa    MW: 39293.1 Da    PI: 10.0153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.4e-2027110897
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s ++ +++l lpk+f ++ +  k+ +  +tl+ +sg +W++ l  + + +++++ +GW++Fvk++ Lke+Df+vFk++g+s f   v +f
  Medtr1g021350.1  27 STTHFQQQLALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTRNDTVYFMDGWQRFVKDHSLKENDFLVFKYNGESLF--EVLIF 110
                      45556678*******85555..558889***************..88888899999*********************998888..66666 PP
2B340.93.8e-132503192296
                      H.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  22 faeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +       ++++++++l +++g++W+v+       +++ +++l++GW   v+an +k gD+++F+l+++se   +v++
  Medtr1g021350.1 250 H------LPKGNIQIILHNLKGERWTVNAVAiakGRHKTSHILSAGWITSVRANSIKIGDVCIFELIDESEL--RVRI 319
                      2......2456789**************966666777777**************************986665..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-2318111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.76320113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-2421111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-2021111No hitNo description
SMARTSM010193.0E-1822113IPR003340B3 DNA binding domain
PfamPF023625.1E-1727110IPR003340B3 DNA binding domain
SMARTSM010190.025232323IPR003340B3 DNA binding domain
CDDcd100173.63E-10240319No hitNo description
SuperFamilySSF1019364.9E-12247320IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-11249320IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-10250319IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715257323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGSGRRSREE EIYWNHFQFI HFTLFLSTTH FQQQLALPKT FSDNLKKKLP ENVTLKGPSG  60
VVWNIGLTTR NDTVYFMDGW QRFVKDHSLK ENDFLVFKYN GESLFEVLIF NGESLCEKAA  120
SYFVLECGQK SILLPNGGVE CASPEKFRRT RTPFAVPFET TNGKTFNAGI ESASSKKCMA  180
DALTKTTTIQ FPFQPTGKRT KKKPVKEAVP VKTKKRGRPP KDGNSSKRAL DLKACNKEHS  240
ECTLWISMAH LPKGNIQIIL HNLKGERWTV NAVAIAKGRH KTSHILSAGW ITSVRANSIK  300
IGDVCIFELI DESELRVRIA EVGKDGLDYQ VGKEGLDHQN EHMKLNSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136861e-129flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589271.21e-150B3 domain-containing protein REM16
TrEMBLG7I4K70.0G7I4K7_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-43B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]