PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021330.1
Common NameMTR_1g021330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 386aa    MW: 43382.4 Da    PI: 8.5511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.3e-2127115397
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +++++s +  +++l lpk f ++ +  k+ +  +tl+ +sg +W++ l  + +++++++ +GW++Fvk++ Lke+Df+vFk++g+s f   v +
  Medtr1g021330.1  27 TIFLQSTTDFQQQLALPKIFSDNLK--KKLPENVTLKGPSGVVWNIGL--NTRGESVYFVDGWRRFVKDHSLKENDFLVFKYNGESLF--EVLI 114
                      677889999999********85555..558889***************..99999***************************998888..6666 PP

                      E CS
               B3  97 f 97 
                      f
  Medtr1g021330.1 115 F 115
                      6 PP
2B3543.1e-17264355195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k+ ++ +v+ s+ + +p++f  eh +k  + ++++l + +g+ W v+     k +++++l +GW +Fv+an++k gD+++F+l+++ e   +
  Medtr1g021330.1 264 FVKIIKTFHVSGSCVMNIPRQFSMEHLKK--GRIKIILHNMKGECWIVNSVPtAKVPKSHTLCAGWMSFVHANNIKIGDVCIFELINDCEL--R 353
                      88999999**************9999544..6789*************99556899999**************************997666..4 PP

                      EE CS
               B3  94 vk 95 
                      v+
  Medtr1g021330.1 354 VR 355
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2221116IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-1925118IPR003340B3 DNA binding domain
PROSITE profilePS5086315.94725118IPR003340B3 DNA binding domain
CDDcd100171.57E-2026116No hitNo description
PfamPF023621.1E-1826115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-2329116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-22255357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-23259357IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-18262356No hitNo description
SMARTSM010194.4E-13264360IPR003340B3 DNA binding domain
PfamPF023626.0E-14264355IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943264360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGEGRTQNSK SWEEEIYWSH FQFIHFTIFL QSTTDFQQQL ALPKIFSDNL KKKLPENVTL  60
KGPSGVVWNI GLNTRGESVY FVDGWRRFVK DHSLKENDFL VFKYNGESLF EVLIFNGESF  120
CEKAASYFVL ECGQAHAEQG GNKGKNSNKS VEEVNTTNGS VECASPEKFR SLDSIRTPLA  180
LTFETTNGKT FNAGFKSASP EKPVIEVTPV QTKKRARTPK EANSWESACN KEHSEAALSK  240
LSRKLSRNDE EKIVQSFSSS VPYFVKIIKT FHVSGSCVMN IPRQFSMEHL KKGRIKIILH  300
NMKGECWIVN SVPTAKVPKS HTLCAGWMSF VHANNIKIGD VCIFELINDC ELRVRIAGVG  360
KEGLDCQVGK EGLDHQNEHM KLNSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589271.20.0B3 domain-containing protein REM16
TrEMBLG7I4K50.0G7I4K5_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-52B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]