PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021320.1 | ||||||||
Common Name | MTR_1g021320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 843aa MW: 94096.4 Da PI: 8.5317 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.6 | 1.5e-20 | 30 | 113 | 7 | 96 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + +++l lpk+f ++ + k+ + +tl+ +sg +W+v l + +++++++t+GW++Fvk++ Lke+Df+vFk++g+s f v + Medtr1g021320.1 30 QTTTDFQQQLALPKTFSDNLK--KKLPGNVTLKGPSGVVWNVGL--TARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLF--EVLI 113 444555667*******85555..457779***************..********************************998888..5555 PP | |||||||
2 | B3 | 56.4 | 5.6e-18 | 189 | 272 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 p+d +++l lpk+f ++ + k+ + +tl+ + g W++ l +++++++ +GW++Fv+++ Lk++Df+vF ++g+s f v +f+ Medtr1g021320.1 189 PEDF--KQQLALPKTFSDNLN--KKLPENVTLKGPGGVAWKIGL--ITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHF--DVLIFD 272 4333..3459******85444..558889***************..66666777777**********************99999..888887 PP | |||||||
3 | B3 | 53.8 | 3.4e-17 | 506 | 597 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k++++ +v + ++l +p +f ++h +++++++tl +++g++W+v+ ++ +++l +GW +Fv+ n Lk gD+++F+l+g+ e + Medtr1g021320.1 506 FVKIMKTFNVERPRILNIPYEFSKDHL--PNCKIKITLHNLKGEQWTVNSVPrTRLHASHILCGGWLNFVRGNSLKIGDVCIFELIGECEL--R 595 8999*******************9996..45999***************9553444555***************************96555..5 PP EE CS B3 94 vk 95 v+ Medtr1g021320.1 596 VR 597 55 PP | |||||||
4 | B3 | 44.8 | 2.2e-14 | 730 | 816 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 f+k++++ +v s l +p +f ++h +++++++tl++++g+ W+v+ ++ + +++ +GW+ Fv++n+++ gD+++F+l+++ Medtr1g021320.1 730 FVKIMKKFNVCGSYTLKIPCQFSTAHL--PARNTEVTLRNSRGKCWTVNSVPyvQGE--TtiHTFCGGWNAFVRDNDINFGDTCIFELVSD 816 789999999999999********9995..457789**************95433444..3459999*********************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-23 | 22 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.665 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-20 | 25 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.49E-21 | 25 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-23 | 31 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-17 | 32 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.227 | 181 | 274 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-22 | 183 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.6E-16 | 184 | 274 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.40E-19 | 184 | 272 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-23 | 184 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.4E-15 | 192 | 272 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-22 | 497 | 598 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-23 | 499 | 599 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-21 | 504 | 598 | No hit | No description |
SMART | SM01019 | 9.8E-14 | 506 | 602 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-14 | 506 | 598 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.817 | 506 | 602 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-22 | 722 | 824 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-23 | 723 | 825 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-16 | 728 | 823 | No hit | No description |
SMART | SM01019 | 2.5E-6 | 730 | 829 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 730 | 816 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 730 | 827 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MGGAGGSSKS WEKEIYWTHF QFIHFIQFLQ TTTDFQQQLA LPKTFSDNLK KKLPGNVTLK 60 GPSGVVWNVG LTARDDTIYF TNGWQRFVKD HSLKENDFLV FKYNGESLFE VLIFHGDSFC 120 EKAASYFVGK CGQAHTEQVC NKGKSSNNSV EEVSTPSNGS VECSLPEKSW EEDIYWTHFQ 180 FIHFTQLLPE DFKQQLALPK TFSDNLNKKL PENVTLKGPG GVAWKIGLIT RDDTVYFLNG 240 WQRFVNDHSL KDNDFLVFNY NGESHFDVLI FDGESFCEKE ASYFVGKCSH TQTELGGSKA 300 NETNNSIEEV NTASSDGGVE CGLYEKFQDL NNIGTPLAVP VETTNEKTFN AGVESDSPEL 360 LIADTVTKTT AIQFPYQPTG KRSKRRRSST SANCCWRALD RVAYNKQHSV TIAVPSQTTG 420 QKTKKPVNEV TPGRSMKRGR QAKTATSGER SIDWVACNKE NSEAANLNRS GKADGHDILS 480 GASLSKLSPH AEKEIAQSFT SSFPYFVKIM KTFNVERPRI LNIPYEFSKD HLPNCKIKIT 540 LHNLKGEQWT VNSVPRTRLH ASHILCGGWL NFVRGNSLKI GDVCIFELIG ECELRVRINE 600 VGKDGLDSQV GKLACRLDVA SHKTSRFMPK KHKISSKCCA EVDLLDKKLS EICQEAALSS 660 ELKKSVRASN TSKKAGLSPK SKASHKKPAV PRKHRIEDAL SSQANDSLKM LFALDEQRVA 720 EAFTSPFPYF VKIMKKFNVC GSYTLKIPCQ FSTAHLPARN TEVTLRNSRG KCWTVNSVPY 780 VQGETTIHTF CGGWNAFVRD NDINFGDTCI FELVSDYIMQ VRISGVGKEG LDHQNGNVKL 840 TS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 0.0 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. | |||
GenBank | AC202488 | 0.0 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589270.2 | 0.0 | uncharacterized protein LOC11411561 isoform X1 | ||||
Refseq | XP_024631135.1 | 0.0 | uncharacterized protein LOC11411561 isoform X1 | ||||
Refseq | XP_024631136.1 | 0.0 | uncharacterized protein LOC11411561 isoform X1 | ||||
TrEMBL | G7I4K4 | 0.0 | G7I4K4_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59521 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021320.1 |
Entrez Gene | 11411561 |
Publications ? help Back to Top | |||
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