PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021270.1 | ||||||||
Common Name | MTR_1g021270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 597aa MW: 66666 Da PI: 8.6421 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.9e-17 | 21 | 105 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++ l++p f+ +++g +++ ++l+ +sg++W+v+l ++++ ++ GW+ Fv +++L+ gD +vF+++g+ f +v+vf Medtr1g021270.1 21 NPSSTSQ-SLRVPDGFVHQMEGA-TCG-LVSLTGPSGNTWQVRL--VEQDNHLFFHHGWSTFVGDHHLQYGDLLVFRYEGHLHF--TVQVFG 105 4444544.59*******888766.354.9***************..********************************987666..888876 PP | |||||||
2 | B3 | 48.8 | 1.3e-15 | 255 | 346 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ ++ +v+ s l +p +f +h ++++++++l++++g+ W+v+ ++ +++l +GW Fv+ n +k+gD+++F+l+++ e + Medtr1g021270.1 255 FVKIIKTFNVSGSYTLNVPYQFSMSHF--PNCKTKIILYNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIRECEL--R 344 788899999999999********9998..45899***************954566666799************************996555..5 PP EE CS B3 94 vk 95 v+ Medtr1g021270.1 345 VR 346 55 PP | |||||||
3 | B3 | 44.6 | 2.5e-14 | 484 | 569 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 f+k++++ +v+ s l +p +f ++h ++++tl++++g+ W v+ + k+++ +++ +GW Fv++n+++ gD+++F+l+++ Medtr1g021270.1 484 FVKIMKKFNVSGSYTLKIPYQFSAAHlpA----YKTEVTLRNSRGQCWIVNSVPDAKGRTiHTFCGGWIAFVRDNDINFGDTCIFELVSH 569 89999999***************999533....4468***************777777667*************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-22 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-22 | 12 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.563 | 14 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.63E-15 | 14 | 104 | No hit | No description |
SMART | SM01019 | 1.5E-11 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 21 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 246 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-22 | 248 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.16E-19 | 253 | 347 | No hit | No description |
PROSITE profile | PS50863 | 12.83 | 255 | 351 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-12 | 255 | 351 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-12 | 255 | 347 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-21 | 477 | 577 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-22 | 477 | 578 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.00E-17 | 482 | 576 | No hit | No description |
PROSITE profile | PS50863 | 12.393 | 484 | 580 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-7 | 484 | 582 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-12 | 484 | 569 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MGRECKGKLN VRKPHFYHLF NPSSTSQSLR VPDGFVHQME GATCGLVSLT GPSGNTWQVR 60 LVEQDNHLFF HHGWSTFVGD HHLQYGDLLV FRYEGHLHFT VQVFGENACE KEAAFHSECN 120 LNSLTFNNIE GQKSDAEMIS SLDVVGDVQK KMRCDAIENQ EPELAIAGKN QSNYELVRPI 180 SMIRETEETC KECSASAVHV PFQTGNSNEV EDAAILYRSG KEDDHNILSG ASLSKLSAHD 240 EKKIAQSFTS SFPYFVKIIK TFNVSGSYTL NVPYQFSMSH FPNCKTKIIL YNLKGEHWTV 300 NSVPTTRVHT SHTLCGGWMA FVRGNSIKVG DVCIFELIRE CELRVRIAEV GKDGLDCQVG 360 KLACSMLSER HDVASHNTSR YMPKKPKVSS KCRTKVDLSD KKLSKIGQEP VLAIEFKKSG 420 RASTTSKKMG LSPKSKASHK KTAVPRKHRV EDELSSQAKA GLRMLFALDE QRVAEAFTSP 480 FPNFVKIMKK FNVSGSYTLK IPYQFSAAHL PAYKTEVTLR NSRGQCWIVN SVPDAKGRTI 540 HTFCGGWIAF VRDNDINFGD TCIFELVSHY VMQVHISGVG KEGLDHQIGH AKLNNM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15657 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 0.0 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589266.1 | 0.0 | B3 domain-containing protein Os11g0197600 isoform X1 | ||||
TrEMBL | G7I4K0 | 0.0 | G7I4K0_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES59517 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021270.1 |
Entrez Gene | 11413060 |
Publications ? help Back to Top | |||
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