PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021270.1
Common NameMTR_1g021270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 597aa    MW: 66666 Da    PI: 8.6421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.9e-1721105798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++++++  l++p  f+ +++g  +++  ++l+ +sg++W+v+l    ++++ ++  GW+ Fv +++L+ gD +vF+++g+  f  +v+vf 
  Medtr1g021270.1  21 NPSSTSQ-SLRVPDGFVHQMEGA-TCG-LVSLTGPSGNTWQVRL--VEQDNHLFFHHGWSTFVGDHHLQYGDLLVFRYEGHLHF--TVQVFG 105
                      4444544.59*******888766.354.9***************..********************************987666..888876 PP
2B348.81.3e-15255346195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k+ ++ +v+ s  l +p +f  +h   ++++++++l++++g+ W+v+    ++   +++l +GW  Fv+ n +k+gD+++F+l+++ e   +
  Medtr1g021270.1 255 FVKIIKTFNVSGSYTLNVPYQFSMSHF--PNCKTKIILYNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIRECEL--R 344
                      788899999999999********9998..45899***************954566666799************************996555..5 PP

                      EE CS
               B3  94 vk 95 
                      v+
  Medtr1g021270.1 345 VR 346
                      55 PP
3B344.62.5e-14484569187
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k++++ +v+ s  l +p +f ++h        ++++tl++++g+ W v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+++
  Medtr1g021270.1 484 FVKIMKKFNVSGSYTLKIPYQFSAAHlpA----YKTEVTLRNSRGQCWIVNSVPDAKGRTiHTFCGGWIAFVRDNDINFGDTCIFELVSH 569
                      89999999***************999533....4468***************777777667*************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2210109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-2212109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.56314107IPR003340B3 DNA binding domain
CDDcd100171.63E-1514104No hitNo description
SMARTSM010191.5E-1116107IPR003340B3 DNA binding domain
PfamPF023621.5E-1421104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21246348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22248348IPR015300DNA-binding pseudobarrel domain
CDDcd100178.16E-19253347No hitNo description
PROSITE profilePS5086312.83255351IPR003340B3 DNA binding domain
SMARTSM010193.5E-12255351IPR003340B3 DNA binding domain
PfamPF023623.7E-12255347IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-21477577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-22477578IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-17482576No hitNo description
PROSITE profilePS5086312.393484580IPR003340B3 DNA binding domain
SMARTSM010191.5E-7484582IPR003340B3 DNA binding domain
PfamPF023623.8E-12484569IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MGRECKGKLN VRKPHFYHLF NPSSTSQSLR VPDGFVHQME GATCGLVSLT GPSGNTWQVR  60
LVEQDNHLFF HHGWSTFVGD HHLQYGDLLV FRYEGHLHFT VQVFGENACE KEAAFHSECN  120
LNSLTFNNIE GQKSDAEMIS SLDVVGDVQK KMRCDAIENQ EPELAIAGKN QSNYELVRPI  180
SMIRETEETC KECSASAVHV PFQTGNSNEV EDAAILYRSG KEDDHNILSG ASLSKLSAHD  240
EKKIAQSFTS SFPYFVKIIK TFNVSGSYTL NVPYQFSMSH FPNCKTKIIL YNLKGEHWTV  300
NSVPTTRVHT SHTLCGGWMA FVRGNSIKVG DVCIFELIRE CELRVRIAEV GKDGLDCQVG  360
KLACSMLSER HDVASHNTSR YMPKKPKVSS KCRTKVDLSD KKLSKIGQEP VLAIEFKKSG  420
RASTTSKKMG LSPKSKASHK KTAVPRKHRV EDELSSQAKA GLRMLFALDE QRVAEAFTSP  480
FPNFVKIMKK FNVSGSYTLK IPYQFSAAHL PAYKTEVTLR NSRGQCWIVN SVPDAKGRTI  540
HTFCGGWIAF VRDNDINFGD TCIFELVSHY VMQVHISGVG KEGLDHQIGH AKLNNM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.156570.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589266.10.0B3 domain-containing protein Os11g0197600 isoform X1
TrEMBLG7I4K00.0G7I4K0_MEDTR; B3 DNA-binding domain protein
STRINGAES595170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]