PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g019580.1 | ||||||||
Common Name | MTR_1g019580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 14977.4 Da PI: 6.7608 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.9e-10 | 39 | 130 | 8 | 98 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + + g l l f+ +h ++ +e++ + l de+g++W+ l+++ ++ + + +++GW++ v+a ++keg vv g ++ +l++ v+r Medtr1g019580.1 39 LYDVTAGYLKLAE-FCFAHmALD-RETMVIDLVDENGNVWNCSLQFSETPYAdFKIGGGWERLVQARRIKEGACVVVGAPGVgMNLTLFFCVIR 130 5555555666664.555662555.6889******************8888878***********************998888899999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-7 | 33 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-8 | 33 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-8 | 42 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MNFRVHRIAV PVTPDWVVPR PFVHDVFNFQ LTYEKIMSLY DVTAGYLKLA EFCFAHMALD 60 RETMVIDLVD ENGNVWNCSL QFSETPYADF KIGGGWERLV QARRIKEGAC VVVGAPGVGM 120 NLTLFFCVIR R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g019580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151424 | 1e-141 | AC151424.15 Medicago truncatula clone mth2-101c17, complete sequence. | |||
GenBank | AC157645 | 1e-141 | AC157645.8 Medicago truncatula clone mth2-70l21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469920.1 | 2e-60 | uncharacterized protein LOC25485277 | ||||
Refseq | XP_024630903.1 | 1e-60 | uncharacterized protein LOC25485279 | ||||
TrEMBL | G7I3L8 | 1e-93 | G7I3L8_MEDTR; Transmembrane protein, putative | ||||
STRING | AES59453 | 3e-94 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g019580.1 |
Entrez Gene | 11411550 |
Publications ? help Back to Top | |||
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