PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g014860.1 | ||||||||
Common Name | MTR_1g014860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 25119.4 Da PI: 4.3353 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 22 | 70 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr p++ r r++lg+++t e+Aa+a +aa +l+g Medtr1g014860.1 22 YRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 70 9****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 21 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-31 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 22 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-29 | 22 | 80 | No hit | No description |
PRINTS | PR00367 | 5.4E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDININVTTT DQSPNSSNNK MYRGVRKRKW GKWVSEIRLP NSRERIWLGS YDTQEKAARA 60 FDAALYCLRG PHASFNFPNT PLTINVAVNH GVGHQSLSPE EIQDVAAKFA NESPPIELTH 120 EDDQQVPSEA QNDTISNHSY SCPLNDNDGR VQVDYGDLRR MDWKFEDMFD DLNGVANCSN 180 LYGQENMQYS TQLVEEDNVD QIECEDTFSD HSFLWSWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 16 | 79 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g014860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465862.1 | 1e-166 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A072VER1 | 1e-164 | A0A072VER1_MEDTR; Ethylene-responsive transcription factor ERF018 | ||||
STRING | XP_004498968.1 | 3e-93 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 9e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g014860.1 |
Entrez Gene | 25481981 |
Publications ? help Back to Top | |||
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