PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g014780.1
Common NameMTR_1g014780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 232aa    MW: 26249.4 Da    PI: 4.1285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g014780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-173886355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +  +g+Wv+eIr p++   r r++lg+++t e+Aa+a +aa  +l+g
  Medtr1g014780.1 38 YRGVRKRN-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 86
                     9****887.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-293696No hitNo description
SMARTSM003807.9E-3137100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-293795IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-203794IPR016177DNA-binding domain
PROSITE profilePS5103221.9973794IPR001471AP2/ERF domain
PfamPF008471.8E-103786IPR001471AP2/ERF domain
PRINTSPR003675.9E-103849IPR001471AP2/ERF domain
PRINTSPR003675.9E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCSNPTSSI NVTTTDQNPN INVTPTDQNP NSSDNKIYRG VRKRNWGKWV SEIRLPNSRE  60
RIWLGSYDTQ EKAARAFDAA LYCLRGPHAS FNFPNTPLTI NVAVNHGVGH QSLSPEEIQE  120
IAAKFANESS PPIELTQEED HQVPSDPLES QNDTNSNAYS YPLDNDIGDL RRMDWTFDDM  180
FEDMNGVANG SDFYGLQNMQ YSTPPFEEDN VDQIECEDTF TNHSTLWNWN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-163295973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g014780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465858.11e-173ethylene-responsive transcription factor ERF018
TrEMBLA0A072VD251e-172A0A072VD25_MEDTR; Ethylene-responsive transcription factor ERF018
STRINGXP_004498968.12e-83(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-45ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]