PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0489s0020.1 | ||||||||
Common Name | MTR_0140s0030, MTR_0489s0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37966.3 Da PI: 7.0961 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl Medtr0489s0020.1 15 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l Medtr0489s0020.1 68 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.489 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-11 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 66 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.962 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.78E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MMGRPPCCEK LGIKKGPWTP EEDIILVSYI QQHGPGNWRS VPTNTGLMRC SKSCRLRWTN 60 YLRPGIKRGN FTDHEEKMIV HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKRKMNKD 120 QSSTDEGVDQ ESRSQLPNKG QWERRLQTDI HMAKQALSEA LSLQHNPTTL GTLPDQMKPS 180 SSFSHSHEHP PNLNIPSPYA SSYENISRLM ETWMKSPNSS AETNSSSIFS NMQGSSCSEG 240 AQSTTQDHHG LNSSKSDYAS RFRSSHEGNN SFNLNTKEGL FFHQEERINI KANMETHVPL 300 TLLEKWLFED GGASHECHEE LINMSLEGTT SDFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-25 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17795 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0489s0020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ937783 | 1e-135 | KJ937783.1 Caragana korshinskii MYBJ2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441833.1 | 0.0 | myb-related protein 306 | ||||
Refseq | XP_013442559.1 | 0.0 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-106 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A072TFY2 | 0.0 | A0A072TFY2_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | AES91256 | 0.0 | (Medicago truncatula) | ||||
STRING | AET04284 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-104 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0489s0020.1 |
Entrez Gene | 25480441 | 25481134 |
Publications ? help Back to Top | |||
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