PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0250s0040.1
Common NameMTR_0250s0040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 266aa    MW: 30305.6 Da    PI: 5.4255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0250s0040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.4e-1189133554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ + f  L  l+P++     kK++K ++L  A++Y+k+L
  Medtr0250s0040.1  89 HIMAERKRREKLTQNFIALAALVPNL-----KKVDKYSVLVDAIKYLKEL 133
                       899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.63784133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1588150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1688154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.72E-1189138No hitNo description
PfamPF000103.0E-889133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1090139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNEYNLIAEE CNPNFLIDVE ELLSHDIANE INETFSPKLS SDSSFQFQMP CFDNNPNSST  60
TEMENMNHST QTSDESSRKR SRGNHGHDHI MAERKRREKL TQNFIALAAL VPNLKKVDKY  120
SVLVDAIKYL KELKKRLEEL EEQNEKTKIE SQVIVTKPGI YSDDNSSTCD ESIHSVVGLP  180
FQVEARVLGK YILIRIQCQE HKGLIVKIMV EIQRFQLFVV NGSVLPFGDS LIDVTIIAQM  240
DEGYNMSIKE LVKNLRMAVL KFMST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1288153871Transcription factor MYC2
5gnj_B3e-1288153871Transcription factor MYC2
5gnj_E3e-1288153871Transcription factor MYC2
5gnj_F3e-1288153871Transcription factor MYC2
5gnj_G3e-1288153871Transcription factor MYC2
5gnj_I3e-1288153871Transcription factor MYC2
5gnj_M3e-1288153871Transcription factor MYC2
5gnj_N3e-1288153871Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17796RKRSRGNHGHDHIMAERKRR
29297ERKRRE
39398RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242774e-46root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0250s0040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442252.20.0transcription factor bHLH25
TrEMBLA0A072TFX40.0A0A072TFX4_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES908102e-79(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-40bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]