PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0193s0090.1 | ||||||||
Common Name | MTR_0193s0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 23782 Da PI: 9.5888 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+ ++ ++G g W++I+++ g++R++k+c++rw +yl Medtr0193s0090.1 9 KGAWTYEEDNCLKAYILKHGVGKWHLIPERTGLNRCRKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.5e-15 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r ++++E +l+++++++lG++ W++Ia++++ gR+++++k++w+++l Medtr0193s0090.1 62 REDFSKDEADLILRLHNLLGNR-WTLIAARLQ-GRSANDVKNYWNTHL 107 6689******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.266 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.19E-28 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 17.957 | 61 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-14 | 62 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 64 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.40E-10 | 65 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MANTSGVRKG AWTYEEDNCL KAYILKHGVG KWHLIPERTG LNRCRKSCRL RWVNYLNPYI 60 NREDFSKDEA DLILRLHNLL GNRWTLIAAR LQGRSANDVK NYWNTHLRKN VVLGAKENTE 120 KEKPNEIIKA HDAIKEPRLN VKPNPVTHPL LTSKTFGDVS RDRDDSSDTM VPDQIDSQPN 180 LDNAPILCLQ SGCSSSQEGK YKLFKWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-21 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0193s0090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442390.1 | 1e-154 | transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 2e-46 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A072TSA4 | 1e-152 | A0A072TSA4_MEDTR; R2R3-myb transcription factor | ||||
STRING | AES99302 | 7e-89 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-48 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0193s0090.1 |
Entrez Gene | 25480603 |
Publications ? help Back to Top | |||
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