PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0105s0070.1 | ||||||||
Common Name | MTR_0105s0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SRS | ||||||||
Protein Properties | Length: 87aa MW: 9345.87 Da PI: 8.1295 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 56.5 | 1.1e-17 | 43 | 75 | 9 | 41 |
DUF702 9 qdCGnqakkdCaheRCRtCCksrgfdCathvks 41 dCGnqakkdCa++RCR CCk+++f+C+th+k Medtr0105s0070.1 43 TDCGNQAKKDCAYSRCRSCCKNKDFNCHTHIKT 75 69*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.9E-14 | 43 | 76 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.0E-16 | 44 | 75 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MAFPISHLFT LTLTPAVGFP PGSDPSAPIT VITTKLFPVS LLTDCGNQAK KDCAYSRCRS 60 CCKNKDFNCH THIKTSEALG FLLIEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0105s0070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140104 | 1e-64 | AC140104.22 Medicago truncatula clone mth2-10g22, complete sequence. | |||
GenBank | AC142395 | 1e-64 | AC142395.41 Medicago truncatula clone mth2-18g1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7JEL2 | 1e-56 | G7JEL2_MEDTR; Zinc finger, LRP1 type protein, putative | ||||
STRING | AES69999 | 2e-57 | (Medicago truncatula) | ||||
STRING | AES87314 | 2e-57 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 7e-14 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0105s0070.1 |
Entrez Gene | 25480301 |
Publications ? help Back to Top | |||
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