PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0095s0040.1 | ||||||||
Common Name | MTR_0095s0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 26908.8 Da PI: 6.5218 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Medtr0095s0040.1 5 KQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEfnrvlFIRSNVDLKDKWRNL 56 79***************************99999998669999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.089 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.23E-21 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV AKHGVGKWRT IIKDPEFNRV LFIRSNVDLK DKWRNLSVMG 60 NGSSSREKSK GAIKRLNHPV PKQDDNSMAI TAVTGPSDDD EIVDAQPLQV SRDMPHIPGP 120 KRFIVKLDNL ILEAISSLNE LGGSNTTTIA SFIEELILVQ RGVLATLFSI LTPTLTISLD 180 EIHVGFTTCE THFQNVGSTL ILPNKRVGVR ESVPSTPLVQ ILVSNLSEGE PWHSVKVATD 240 DMEVIG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17478 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0095s0040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139805 | 0.0 | BT139805.1 Medicago truncatula clone JCVI-FLMt-9K17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446890.1 | 1e-103 | telomere repeat-binding factor 1 isoform X2 | ||||
Refseq | XP_013446891.2 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627975.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627976.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627977.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627978.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627979.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627980.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627981.1 | 1e-103 | telomere repeat-binding factor 1 isoform X1 | ||||
Refseq | XP_024627982.1 | 1e-103 | telomere repeat-binding factor 1 isoform X2 | ||||
Refseq | XP_024627983.1 | 1e-103 | telomere repeat-binding factor 1 isoform X2 | ||||
Refseq | XP_024630321.1 | 1e-104 | telomere repeat-binding factor 1 | ||||
Swissprot | Q8VWK4 | 1e-54 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A072TIM7 | 1e-178 | A0A072TIM7_MEDTR; Myb-like DNA-binding domain protein | ||||
STRING | AET04802 | 1e-173 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 6e-57 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0095s0040.1 |
Entrez Gene | 25480253 |