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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0061s0010.1 | ||||||||
Common Name | MTR_0061s0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15355.5 Da PI: 6.6662 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.1 | 2.2e-08 | 1 | 23 | 21 | 43 |
HHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 21 lKKAeELSvLCdaevaviifsst 43 +KK +E S+LC+++v+v++++++ Medtr0061s0010.1 1 MKKVNEFSILCNVDVCVVLYAPN 23 8*******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 4.0E-7 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-7 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MKKVNEFSIL CNVDVCVVLY APNFEGQGFA KPEVWPKDTK EEQLKFFASL LDDKLDACIQ 60 KINMLKGYHK GKAIAHESHK PCSYPMVSEE GRHAQSHSSK YIGGNLINQA DSIAIYDPKI 120 GTEKKDRVEN DDSLSPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0061s0010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470391.1 | 3e-20 | MADS-box transcription factor 20 | ||||
TrEMBL | A0A072TJB4 | 9e-98 | A0A072TJB4_MEDTR; SRF-type transcription factor (DNA-binding and dimerization domain) protein | ||||
STRING | AES83992 | 3e-71 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-08 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr0061s0010.1 |
Entrez Gene | 25480080 |
Publications ? help Back to Top | |||
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