PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0007s0330.1
Common NameMTR_0007s0330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 205aa    MW: 23759.3 Da    PI: 7.8909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0007s0330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-122170455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      +h+e Er+RR+++ +   +Lr+llP       ++K s ++ + +A++YI++Lq
  Medtr0007s0330.1 21 MHKETERQRRQEMSNLCTNLRSLLPIeY---IKGKRSISDHVNEAMHYINHLQ 70
                      7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-111574No hitNo description
SuperFamilySSF474599.95E-151687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.8361769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-101990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-92170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00292375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNKNHNMWQD IVMMEENKKW MHKETERQRR QEMSNLCTNL RSLLPIEYIK GKRSISDHVN  60
EAMHYINHLQ NKVKQLQDKK EELMKVSNLS RNVTTQNGSS SSNIQPFVIV QPFPGGLEIV  120
CSYSFNKCLF PLSRVLSMLL KEGLNLISCT SNMIEGRFIY TIRSEEPIMP GIDYSELQRK  180
LTEAISCSSL QENSFEPEID NILR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0007s0330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630580.11e-139transcription factor bHLH36
TrEMBLA0A072TK731e-148A0A072TK73_MEDTR; Transcription factor
STRINGXP_004506301.13e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]