PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0018.23.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 516aa    MW: 57973.8 Da    PI: 6.837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0018.23.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13306352455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  MapolyY_B0018.23.p 306 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 352
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-142467IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.53E-14300356No hitNo description
PROSITE profilePS5088817.358302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19305367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-18306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSGCWRRTRL LVTCVQGLIW LSYSSIQKMA GIQTIACIPT KNGVVELGST ELIFESWEVI  60
NNIKEFFSEG IFEQSRRYQK PHLSSGKIGA MGCTHVTYPT GIDISNDVIS NSCVKCNTFD  120
KLNASSLPSN VDSLDYLFSD DASLVEIPLE TDKNHMQPVG VPTLQSRLII EEDKTAVFSK  180
PLYLSLDQGR TAVSETGEIL NPPEMTLNLR RSENQLQQKD SKFYLKKETM SVDSQSKDRA  240
GESANHQVVD AKGVSLPSFV GRSSIESEQD VDSEAEVSYK DVVLVEQKPP RKRGRKPAHD  300
REEPLNHVQA ERQRREKLNQ RFYALRSVVP NVSKMDKASL LGDAIAYIQE LQQKLQIMEL  360
KCQSVPSSGR PSTSNHRGSR SHLDYSAQTG NTRSLHSYIY ILDQKPNVDV ELLGMEVMVR  420
VNHLSEAYPT SQLMFALQDL QLEVQHANIS TVEDRIFHLV IAKMSVKNVL TREQLLGAIE  480
KAFQSNTVDL KEQEQLSKDK RPTISHFTIQ CPDKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26301355357Transcription factor MYC2
5gnj_B2e-26301355357Transcription factor MYC2
5gnj_E2e-26301355357Transcription factor MYC2
5gnj_F2e-26301355357Transcription factor MYC2
5gnj_G2e-26301355357Transcription factor MYC2
5gnj_I2e-26301355357Transcription factor MYC2
5gnj_M2e-26301355357Transcription factor MYC2
5gnj_N2e-26301355357Transcription factor MYC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VWR80.0A0A2R6VWR8_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-47ABA-inducible BHLH-type transcription factor