PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0018.21.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 505aa    MW: 56792.3 Da    PI: 6.3304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0018.21.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13320366455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  MapolyY_B0018.21.p 320 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 366
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-143881IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.14E-15314370No hitNo description
PROSITE profilePS5088817.358316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19319381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-18320377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVLERQVKLS LVENMSGCWR RTRLLVTCVQ GLIWLSYSSI QKMAGIQTIA CIPTKNGVVE  60
LGSTELIFES WEVINNIKEF FSEGIFEQSR RYQKPHLSSG KIGAMGCTHV TYPTGIDISN  120
DVISNSCVKC NTFDKLNASS LPSNVDSLDY LFSDDASLVE IPLETDKNHM QPVGVPTLQS  180
RLIIEEDKTA VFSKPLYLSL DQGRTAVSET GEILNPPEMT LNLRRSENQL QQKDSKFYLK  240
KETMSVDSQS KDRAGESANH QVVDAKGVSL PSFVGRSSIE SEQDVDSEAE VSYKDVVLVE  300
QKPPRKRGRK PAHDREEPLN HVQAERQRRE KLNQRFYALR SVVPNVSKMD KASLLGDAIA  360
YIQELQQKLQ IMELKCQSVP SSGRPSTSNH RGSRSHLDYS AQTGNTRSLH SYIYILDQKP  420
NVDVELLGME VMVRVNHLSE AYPTSQLMFA LQDLQLEVQH ANISTVEDRI FHLVIAKDRI  480
LFYSSSNPYE CEECADKGAT PWCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26315369357Transcription factor MYC2
5gnj_B2e-26315369357Transcription factor MYC2
5gnj_E2e-26315369357Transcription factor MYC2
5gnj_F2e-26315369357Transcription factor MYC2
5gnj_G2e-26315369357Transcription factor MYC2
5gnj_I2e-26315369357Transcription factor MYC2
5gnj_M2e-26315369357Transcription factor MYC2
5gnj_N2e-26315369357Transcription factor MYC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VWT40.0A0A2R6VWT4_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-47bHLH family protein