PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MapolyY_B0018.16.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 606aa MW: 68046.4 Da PI: 5.7156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.9e-13 | 431 | 477 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N++f Lr+++P+ K++Ka+ L A+ YI++Lq MapolyY_B0018.16.p 431 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 477 6999**********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.6E-42 | 41 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 3.72E-15 | 425 | 481 | No hit | No description |
PROSITE profile | PS50888 | 17.358 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-18 | 430 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-11 | 431 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-18 | 431 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-17 | 433 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MVQKARRFFG CTFHDVQYQI LRAHLEEQRS IGGFIHLYLE QRVLGWGDGY FKGPKESENA 60 DPRGTEKDQT CREEDQLIRR KVLRELQALV CTGEDDTTAS TGLDYVTDTE WFYLVSMSYF 120 FSHGVGTPGQ ALASGEYVWL LEANKAPSHV CTRADLAKTI ACIPTKNGVV ELGSTELIFE 180 SWEVINNIKE FFSEGIFEQS RRYQKPHLSS GKIGAMGCTH VTYPTGIDIS NDVISNSCVK 240 CNTFDKLNAS SLPSNVDSLD YLFSDDASLV EIPLETDKNH MQPVGVPTLQ SRLIIEEDKT 300 AVFSKPLYLS LDQGRTAVSE TGEILNPPEM TLNLRRSENQ LQQKDSKFYL KKETMSVDSQ 360 SKDRAGESAN HQVVDAKGVS LPSFVGRSSI ESEQDVDSEA EVSYKDVVLV EQKPPRKRGR 420 KPAHDREEPL NHVQAERQRR EKLNQRFYAL RSVVPNVSKM DKASLLGDAI AYIQELQQKL 480 QIMELKCQSV PSSGRPSTSN HRGSRSHLDY SAQTGNTRSL HSYIYILDQK PNVDVELLGM 540 EVMVRVNHLS EAYPTSQLMF ALQDLQLEVQ HANISTVEDR IFHLVIAKTS QAHGIHEDSQ 600 SGECD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_B | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_E | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_F | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_G | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_I | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_M | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
5gnj_N | 3e-26 | 426 | 480 | 3 | 57 | Transcription factor MYC2 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00086 | PBM | Transfer from AT4G17880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6VWR5 | 0.0 | A0A2R6VWR5_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 3e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MapolyY_B0018.16.p |