PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0018.13.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 512aa    MW: 57654.9 Da    PI: 5.9806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0018.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-08431458430
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.a 30 
                         +h ++Er+RR+++N++f  Lr+++P+ +
  MapolyY_B0018.13.p 431 NHVQAERQRREKLNQRFYALRSVVPNvS 458
                         6999*********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-4241192IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.76E-9419467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-6425461No hitNo description
PROSITE profilePS5088810.379427481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8428463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5431458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0051433477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVQKARRFFG CTFHDVQYQI LRAHLEEQRS IGGFIHLYLE QRVLGWGDGY FKGPKESENA  60
DPRGTEKDQT CREEDQLIRR KVLRELQALV CTGEDDTTAS TGLDYVTDTE WFYLVSMSYF  120
FSHGVGTPGQ ALASGEYVWL LEANKAPSHV CTRADLAKTI ACIPTKNGVV ELGSTELIFE  180
SWEVINNIKE FFSEGIFEQS RRYQKPHLSS GKIGAMGCTH VTYPTGIDIS NDVISNSCVK  240
CNTFDKLNAS SLPSNVDSLD YLFSDDASLV EIPLETDKNH MQPVGVPTLQ SRLIIEEDKT  300
AVFSKPLYLS LDQGRTAVSE TGEILNPPEM TLNLRRSENQ LQQKDSKFYL KKETMSVDSQ  360
SKDRAGESAN HQVVDAKGVS LPSFVGRSSI ESEQDVDSEA EVSYKDVVLV EQKPPRKRGR  420
KPAHDREEPL NHVQAERQRR EKLNQRFYAL RSVVPNVSKM SVKNVLTREQ LLGAIEKAFQ  480
SNTVDLKEQE QLSKDKRPTI SHFTIQCPDK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-224319346193Transcription factor MYC3
4rqw_B1e-224319346193Transcription factor MYC3
4rs9_A1e-224319346193Transcription factor MYC3
4yz6_A1e-224319346193Transcription factor MYC3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VWV60.0A0A2R6VWV6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-30bHLH family protein