PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0502s0001.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 515aa    MW: 52951.7 Da    PI: 8.6907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0502s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12456501555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P++      K +Ka++L + +eY+k Lq
  Mapoly0502s0001.2.p 456 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIEYVKFLQ 501
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-16449507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.352451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15453505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-13455505No hitNo description
PfamPF000104.3E-9456501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-14457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAAQQGVVVG VSSSLSSAHR LLLGGGPGGP SSPGPTQSPS SSCCPTSCSP SLQASARTLL  60
GCSLPPAAAA AAAAAAGSAA LASAAALVVS TQTCSSSQAQ QYQYQQRRCN PAAAAFHHHQ  120
LQQQQAQPPF LSPPALQALL PSGAHSEMQP ASMLGSRGPV PGVSSARSSL SNAALAMPSL  180
LSPPHQQPAL QFEQAEQTPP MDEFLEQMFS LPSWSEMAGA GRAPWEFNAA AAGAATRLGV  240
DAQKLFTMSL LPPGLLGGPH TSTTTTNNNN TNNNNATSNN NNNHSGRDLQ DGADSAHVGD  300
SVLGYSNDDH LLGARLRGLQ ETPSSVPGIG TRAGATLTRS PSVGSSGSEG SGGPQSPPPI  360
APTWRQPYVR DAPQGLFASF TGGQVTQNQV PRSAGQQSHQ QGNGASSQGV QGQGQALPTY  420
GSPSITATTQ PHSNSGVAVA ARPRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN  480
SNKTDKASML DEIIEYVKFL QLQVKVSCTG SLSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460465RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VYN60.0A0A2R6VYN6_MARPO; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-20LJRHL1-like 3