PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0502s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 565aa    MW: 58206.6 Da    PI: 8.3142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0502s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11506551555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P++      K +Ka++L + +eY+k Lq
  Mapoly0502s0001.1.p 506 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIEYVKFLQ 551
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-16499557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.352501550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15503555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.83E-13505555No hitNo description
PfamPF000104.8E-9506551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-14507556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAAQQGVVVG VSSSLSSAHR LLLGGGPGGP SSPGPTQSPS SSCCPTSCSP SLQASARTLL  60
GCSLPPAAAA AAAAAAGSAA LASAAALVVS TQTCSSSQAQ QYQYQQRRCN PAAAAFHHHQ  120
LQQQQAQPPF LSPPALQALL PSGAHSEMQP ASMLGSRGPV PGVSSARSSL SNAALAMPSL  180
LSPPHQQPAL QFEQAEQTPP MDEFLEQMFS LPSWSEMAGA GRAPWEFNAA AAGAATRLGV  240
DAQKLFTMSL LPPGLLGGPH TSTTTTNNNN TNNNNATSNN NNNHSGRDLQ DGADSAHVGD  300
SVLGYSNDDH LLGARLRGLQ ETPSSVPGIG TRAGATLTRS PSVGSSGSEG SGGPQSPPPI  360
APTWRQPYVG GVPPLPLGLG QAKPETLLRG DSGEAHLLGK RPRDEDEVSM REAHTGNNVR  420
DAPQGLFASF TGGQVTQNQV PRSAGQQSHQ QGNGASSQGV QGQGQALPTY GSPSITATTQ  480
PHSNSGVAVA ARPRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN SNKTDKASML  540
DEIIEYVKFL QLQVKVSCTG SLSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510515RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VYU30.0A0A2R6VYU3_MARPO; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-19LJRHL1-like 3