PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0474s0001.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 700aa    MW: 77204.1 Da    PI: 6.4558
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0474s0001.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-16479565284
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          +k+lt+ dv+++gr++lpkk ae+h   ++ +e++++ l+d +  r+W +k+++  ++ks++y+l+ ++ eF+k +gL++gD +++++
  Mapoly0474s0001.3.p 479 QKQLTTTDVGSLGRIILPKKEAETHlpHLPDKEGIEMCLYDHDVdRTWIMKYRFwpNNKSRMYLLE-NTGEFAKYHGLQQGDLLLIYR 565
                          79*************************7788899*******6655*******99777777777777.****************99983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-23472566IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20477565IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-22478577No hitNo description
PROSITE profilePS508639.122478579IPR003340B3 DNA binding domain
SMARTSM010191.9E-15478579IPR003340B3 DNA binding domain
PfamPF023623.3E-12479565IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MHSTVSWRPA PSGCMSGTLN DVLMFTSRNR PATLEMSEDK DVEDKDLNPI EWQLLRDGVN  60
GTNSRPKPSD PDFRLPFGSS QKQHVMAPAA PQWDSARNSM DGRVVVNYLR SFGPGRSDSS  120
TCSVEGQVRG IRRSLDGHLL SSMVNRDEVP DREEEFGTES QGLSSLILGQ GVHSSAQLFG  180
CGLVVQSAAT KGQQQVHRAP HFRNLFPEQS SSFSSVLTQE SLPSDVNEHI HPQKKPRRYD  240
FVEPLSQAEI DTIRLNEESH YRNSYPPRGA PLADFIDAHH SYKIPAASFS TSLPDRPTFT  300
SNIPLQNLSL SNYQVSSPSV PLKSSSNDTS SARTPLVDYS YSSVDTKLQN GMRSVARGGP  360
LLSGGGGFKP LNLMDGPTQA AVSRDYLQSG SMGQVCSIRP TSMETGSRAA WPAGFINFPP  420
PTLESSGCVI PGMSSRRSLL DLDHHHHHHH HHHHEMAAEE REVQRVHPIS ESQLRLVIQK  480
QLTTTDVGSL GRIILPKKEA ETHLPHLPDK EGIEMCLYDH DVDRTWIMKY RFWPNNKSRM  540
YLLENTGEFA KYHGLQQGDL LLIYRQLPAR YVLRVKKMAP PLRLVTPPQS ISESGGAEDL  600
VSGAAETVSS RALTSSASSR TLNSSSAASK EGQSTASDHD PTELDGESVY NLEEFPSLIE  660
AEEIIDIFPL DSDSSEAQLS PVESIQVVRK THHMRADLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-314745791107B3 domain-containing transcription factor FUS3
6j9b_D9e-314745791107B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VYS60.0A0A2R6VYS6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-35B3 family protein