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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0216s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | NF-YB | ||||||||
Protein Properties | Length: 194aa MW: 21210.6 Da PI: 6.1195 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 188.4 | 4.9e-59 | 31 | 127 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimkk+lP naki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfedyveplkvyl+ky Mapoly0216s0010.1.p 31 VREQDRFLPIANISRIMKKALPVNAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKY 120 69**************************************************************************************** PP NF-YB 91 relegek 97 re+eg+k Mapoly0216s0010.1.p 121 REMEGDK 127 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.3E-58 | 27 | 147 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.17E-43 | 34 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-28 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.1E-22 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.1E-22 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 2.1E-22 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAGTSSPGSQ DNSHSDDFGN AGGGDRDNSN VREQDRFLPI ANISRIMKKA LPVNAKIAKD 60 AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MSTLGFEDYV EPLKVYLHKY 120 REMEGDKGSS INKPGESNSG KKEGTSHPAV QQMSAGVQAY NMGYNIQNQM MSAPPNYQLQ 180 MQQMLAAPGG QQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-48 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-48 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369282.1 | 2e-89 | nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Swissprot | O23310 | 1e-65 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2R6VZY9 | 1e-143 | A0A2R6VZY9_MARPO; Uncharacterized protein | ||||
STRING | PP1S25_89V6.1 | 4e-88 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-68 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0216s0010.1.p |
Publications ? help Back to Top | |||
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