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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0176s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18098.9 Da PI: 7.5043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.6 | 5.9e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCv+apyfp ++p+kfanvhk+FGasnv k+l++lp + r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ql Mapoly0176s0008.1.p 8 PCAACKLLRRRCARDCVFAPYFPPDEPQKFANVHKVFGASNVNKMLQDLPIHSRGDAVSSMVYEADARVRDPVYGCVGAISSLQQQVAQL 97 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++la++++e Mapoly0176s0008.1.p 98 QTQLAVANAE 107 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.077 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MPGSGMSPCA ACKLLRRRCA RDCVFAPYFP PDEPQKFANV HKVFGASNVN KMLQDLPIHS 60 RGDAVSSMVY EADARVRDPV YGCVGAISSL QQQVAQLQTQ LAVANAEIVC IRMHQAALVS 120 NAHHMKDGMV TNNSPPLTPP SPELNHHMKP MIGGLEPLEL TEPLWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-51 | 2 | 109 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-51 | 2 | 109 | 6 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384061.1 | 3e-84 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384062.1 | 3e-84 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384063.1 | 3e-84 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384064.1 | 3e-84 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 2e-62 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A176W3Y2 | 1e-120 | A0A176W3Y2_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W2G5 | 1e-120 | A0A2R6W2G5_MARPO; Uncharacterized protein | ||||
STRING | PP1S238_53V6.1 | 1e-83 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-41 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0176s0008.1.p |
Publications ? help Back to Top | |||
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