PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0159s0017.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 324aa MW: 38191.7 Da PI: 6.2433

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0159s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69	9.1e-22	41	106	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +W +e+++ i++r e+e+++ ++k++k+lWe ++ km+e+gf+rs+ qCk+kw+nl +ryk e Mapoly0159s0017.1.p 41 QWGYHETKEFIAIRAELEKDFTQTKRNKTLWELIAGKMKEKGFRRSADQCKCKWKNLVNRYKGFDE 106 7*************************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.853	34	98	IPR017877	Myb-like domain
CDD	cd12203	3.83E-27	40	103	No hit	No description
Pfam	PF13837	1.0E-17	41	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MIGENLAIMA PLPLQASPTV TGEISAVTPG RGRRKEDRIP QWGYHETKEF IAIRAELEKD 60 FTQTKRNKTL WELIAGKMKE KGFRRSADQC KCKWKNLVNR YKGFDEASDF SPLSQLSARV 120 DDELASEHCV IGKETSEPDN GRQCAFFEEL DAIFKERAKN MDRLLLESES GSRPKKKAKR 180 VKRILGGVKS SDDDTEDEED EEADSEDERI VRRKKRKADK ERQRVTAEKY RANSMQEVLE 240 DFFQQQQRVE DQWREGVERR EHERRMREQE WREAMEKLEQ ERLLREQEWR EREDQRRARE 300 EARAEKRDDL FAALISKLTQ HDG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	1e-114	trihelix transcription factor GT-3b-like
TrEMBL	A0A176VZJ2	0.0	A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W406	0.0	A0A2R6W406_MARPO; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-113	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-28	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0159s0017.1.p