PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0150s0016.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 693aa    MW: 72934.3 Da    PI: 5.7305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0150s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11504546754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A++Y+++L
  Mapoly0150s0016.1.p 504 MAERRRRKKLNDRLYMLRSVVPKI-----TKMDRASILGDAIDYLRDL 546
                          79*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567497546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15500558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9503546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14503552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15504558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.59E-13504551No hitNo description
CDDcd048737.90E-4620676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MASTRVSGAS AWMAGSSSNL RLPSSIPFLE DDPNPRWRHT PAPCQQNQMT QEHSLVKDDL  60
PSSIGFSQGL SDIPSSTYSK GILEEDWYMT TENSLMDEMK ELSYAASSLA TQSEPMTSSH  120
YSLDSTHLNF LSRNASKNFN SADNRSYLSN FMEGGGLPFD TSGTGPLNSF GHTGPHGGGA  180
GVVGGHNGNA ILHNHGQIGL STSSPLAGNN QFSGSNMSIL PNSGLVAGNS GFSNLHSNSN  240
SLNESMLLSN ISSRPTLGGS SFGQNLSGFL NGGISNAFSC GSGPPIDANF AQSLSSSMAR  300
GAASVDMFNS NNHNSLGRTI AGNTIKSTSP LLNVDKPPFR SKAGVLSPDA VTATVAGSQQ  360
TIFQKRAALR RTVSSSGGSI SPKLKTHPQL VTSVSNDSSV DMPDEESPNI KNPSKGKKAV  420
SPASRVDKRP PALPSGSDEM ADGDQDDGKD DDDMDESGDV SGMLYEDDAA GMDGAAAGQG  480
MLQSGGHSGE KGKGKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKITKM DRASILGDAI  540
DYLRDLVAKI HELHAELDGD TAADKPPPLS PSAPLPMQIT SALAYRVKEE PPSTFPDLTP  600
TTIEVSAKEE GKALNIHMLC ARKPGLLLSI MRALDGLGLE VEQGVVSCFN GFALDIFRAE  660
QLSGLDVGPE EIRQALLLTT GASPVEQNVI LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490496KGKGKKG
2505512ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VHX40.0A0A176VHX4_MARPO; Uncharacterized protein
TrEMBLA0A2R6W5650.0A0A2R6W565_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-62bHLH family protein