PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0143s0011.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 301aa    MW: 32269.4 Da    PI: 9.6695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0143s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-092063344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+ +d+l+ +a + + g+   +W++Ia++++ g  + ++k ++
  Mapoly0143s0011.1.p 20 PWTPKLDKLFEKALAIYDGDspdRWEKIAAKLP-GVDPTEVKKHY 63
                         8********************************.9999*****99 PP
2Myb_DNA-binding41.33.5e-13144188347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Mapoly0143s0011.1.p 144 PWSEEEHRLFLLGLAKFGKGDWRSISRNFVVSRTPTQVASHAQKY 188
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-41769IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-91973IPR009057Homeodomain-like
CDDcd001672.63E-62067No hitNo description
Gene3DG3DSA:1.10.10.607.6E-42066IPR009057Homeodomain-like
PROSITE profilePS500906.0862067IPR017877Myb-like domain
PfamPF002492.8E-62063IPR001005SANT/Myb domain
PROSITE profilePS5129417.912136193IPR017930Myb domain
SuperFamilySSF466895.53E-16139194IPR009057Homeodomain-like
SMARTSM007179.1E-11141191IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-16141191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.6E-11142187IPR009057Homeodomain-like
PfamPF002495.7E-11144188IPR001005SANT/Myb domain
CDDcd001675.02E-10144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MATTVAQTAG SPGQLPIPPP WTPKLDKLFE KALAIYDGDS PDRWEKIAAK LPGVDPTEVK  60
KHYDRLIEDL NSIETGRVAL PNYHKSVGLM SSSDEDSPTS RKPVHGGHHG LGGSNANATN  120
ATSLPSGKAP SSKASDPERR KGIPWSEEEH RLFLLGLAKF GKGDWRSISR NFVVSRTPTQ  180
VASHAQKYFI RLNSINNKDK RRSSIHDITS VNDGDSLPQS PGPITGLPSP GAQWPRSGLQ  240
GASMYDMGGM GGPDQAIGGQ MLMTPTGHPH HVPYGHVPVM QGPPMAMQHM SYPMPQSANA  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-2020951085RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.12e-90transcription factor SRM1-like
RefseqXP_024366443.12e-90transcription factor SRM1-like
SwissprotQ9FNN61e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A176VCA50.0A0A176VCA5_MARPO; Uncharacterized protein
TrEMBLA0A2R6W6480.0A0A2R6W648_MARPO; Uncharacterized protein
STRINGPP1S256_11V6.18e-90(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-56MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]