PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0126s0029.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 516aa    MW: 55497.6 Da    PI: 6.6559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0126s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13311354855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er RR+++N  f++L +llP++    + K +K++i+ +A++YI+ L+
  Mapoly0126s0029.1.p 311 TERERRKKMNGMFSTLHSLLPHL----NSKADKSTIVDEAINYIQTLE 354
                          6*********************9....9*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.424303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14306370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15307372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-12308354No hitNo description
SMARTSM003534.1E-8311359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-11311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00346443482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MMAHNLATHS LTSALNHRSP AYLSQDHQAV RHISVITMPD ILEAFNHSQA MSSTTNLSTS  60
VRNSGGDPWE LPELKWLDPA DNVSGPSENL PEADNPSLPA EKFPIDGERW PFSSLYGGDR  120
VPSNAEEAQF SLQSIVSASP ASSGSSVLMK GRMSFVGRDF PSSAQQQQQQ QAPEWRSTSG  180
NSGHKRPTSE RPDSDFAQEK LSNSERSSFK DNKSVPDIPV SNSEVSALTT TYPPEKRSRT  240
ASDTRATRDS CTQGGGGGGG AGGNGGSGAD QQKLSVEKGS VSVTNDQTVS PGRDSKKSAN  300
TVSDHEIHIW TERERRKKMN GMFSTLHSLL PHLNSKADKS TIVDEAINYI QTLEGTMKGL  360
MKRKGEMSNA SSTMMPTSLA LLQASQHGMA ETDSVCKVSP TISFGGEIKP SGSGSSTPTS  420
EAQFRTQLSK NVVLNMCGND AFITICSPRG RLGLLCRVLF VIESHNLHVL NAHICTTNDT  480
IMYMVHAQTT EDQLGNSDML NIALQDLTKC LTAHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6W8Y50.0A0A2R6W8Y5_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-32bHLH family protein