PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0124s0021.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 451aa    MW: 47797.9 Da    PI: 4.9534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0124s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11257299855
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N+++ +Lr l+P  +      K++Ka+i   A++Y+++Lq
  Mapoly0124s0021.1.p 257 SERKRRKKLNEGLYTLRALVPRiS------KMDKASIIGDAIDYVRELQ 299
                          6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-13248302No hitNo description
PROSITE profilePS5088815.631249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-16255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-16256315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9257299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDSFTAADPN LHEILERGAA AAAPQSGTGP DFLTALGDGV GVGGGVLGPH SSSSAGSDSF  60
LRQAEVPKPK WPAAPRWMIQ QHIGPPPSFP LAAAAAAAAP VPAAVVVVPS AAASGGSKFS  120
KPASLASPVS GPGPGSSDDR PVKVWCDRNS KQALLKSEGE NAPPSKLIAM AKCDSHNTNI  180
IINNNNNITN TSKSSMVLDT LPAAAAAAAA DSPRGNVIAK DGVDVDLKQI DSSDCSDHME  240
EQEDKATNRT VSKNLVSERK RRKKLNEGLY TLRALVPRIS KMDKASIIGD AIDYVRELQK  300
EVDDLQTAIS EVEASRKSGN LDTEEMSQNA QIMENSMVTE DFEKASRNNT PGSNDDTTTE  360
QKILKLDVAK MEEKSYHLRI FCTKGPGVFV LLMRSLEALG MEVLSANLTS FEENILNTFI  420
AEIKDLEAMK TEEVKAAILD VCARFGLQTT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1469630.0KJ146963.1 Marchantia polymorpha FIT2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E3DAH40.0A0A0E3DAH4_MARPO; FIT2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-36bHLH family protein