PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0120s0051.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family E2F/DP
Protein Properties Length: 542aa    MW: 61600.6 Da    PI: 4.3523
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0120s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.61e-18280360371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           ++Lr+++ +   + +k e+ g++t++eva+e v++                 kn+rRR+YD lNVL+a+++i k +k++++w g
  Mapoly0120s0051.1.p 280 TRGLRHISLS---VTKKLETsGQTTYDEVADEVVADliasedqrfphklsvLSKNIRRRVYDTLNVLNAIGIICK-KKQDVKWLG 360
                          67999*9999...99999999****************************997789********************.*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-27275363IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-14278360IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.4E-16280360IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-13281361IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.3E-4368501IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.25E-16369480No hitNo description
PfamPF087817.3E-13375486IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNTMNHRRLS AESSNIKVVS KSKRKVKTKL FEDSPTKSRI SPEKKECSTG EPESDDTVNF  60
GESDQEGNLF QNASDDSFYN LGGESDFLGG RYFHKFYEDQ DGMISPINEL LQSNSLTDKE  120
SSEFISPNSM GMEDDFQSTP MNLATYSTFF TDSERIPSSV YGMESADDIF LEDIVLPESH  180
ESMESIEKYF LGDIGFPETQ KIIESEEEIS FEGILLSEPE QSMGSEKEES LEEILLPEPE  240
HSETIQTVTK KRTRRKLDKV PPEINGKLGG VKSKVKQDRT RGLRHISLSV TKKLETSGQT  300
TYDEVADEVV ADLIASEDQR FPHKLSVLSK NIRRRVYDTL NVLNAIGIIC KKKQDVKWLG  360
QRNGEATETV EMKRKKLLDL KKSLEMKRAY LQELETKKSR LENLVDRNQI TYFSSGQMPE  420
KYITLPFFLI ENPEGSEVKC GFIAEEDLWT LYVYHDKSTP LPVHDDGCVL KALEDSTAMA  480
TNVTTDLDIY NSLSQDEGSS SFSWMDEILN YASDENHEWN EPLADISLDE DDLELDYLIE  540
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-17272360188PROTEIN (TRANSCRIPTION FACTOR DP-2)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WAB60.0A0A2R6WAB6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-31Transcription factor DP