PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0113s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | Trihelix | ||||||||
Protein Properties | Length: 385aa MW: 41122.7 Da PI: 8.7663 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.9 | 1.6e-10 | 44 | 131 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt+ v + ++ e+ +++ ++l++++W+ev +++ e+g + kqC++k++ l+kr++++ke+ + + + s++++f+++ Mapoly0113s0058.1.p 44 EWTDVAVATFLDCFAEKYAAVKHKNLRGKDWKEVVDNLnkrcvPEGGPFFEYKQCRNKLDGLKKRFRQEKESLNAN--SQPSKWQWFSRM 131 5************************************988888888888899**********************96..45557****999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-15 | 43 | 134 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MMASGLAGAG IGVGVGVVGS GEGLRFRDLV TGETGAGGAK GAAEWTDVAV ATFLDCFAEK 60 YAAVKHKNLR GKDWKEVVDN LNKRCVPEGG PFFEYKQCRN KLDGLKKRFR QEKESLNANS 120 QPSKWQWFSR MCELKGKRAP RVNSSAGVGA GVGVVGGIAP IGGVGGIVPG IVVPLEKSEL 180 DLTEGADNTS DSKEQPDGTD GLPGGLPGDL PDGVGTPFCS QNEADTASPR SKPRAGVGKK 240 TRKRRRSHLH TPCAPELMPV GPNKQPFLWP GDAAQRRPVA TDRTYKLKIK RSGEEDFDDL 300 FHLTGDTVQD LIDSFKSVYW EEENTQVRVQ LKDKVSDAWV TVAPSVSLSQ YGIEAQIIIK 360 PQGSRVLGYP AIPLTVGQMV LPGV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | RKRRR |
2 | 241 | 246 | RKRRRS |
3 | 242 | 247 | KRRRSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WBU8 | 0.0 | A0A2R6WBU8_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 3e-17 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0113s0058.1.p |