PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0105s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | NF-YB | ||||||||
Protein Properties | Length: 172aa MW: 18972.5 Da PI: 4.2582 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.5 | 4.3e-15 | 5 | 107 | 8 | 97 |
NF-YB 8 lPianvsrimkkvlPana.......k......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 lP anv ri+k l + a k i kda e + fi ++++ a+d c++ kr+tin++d+l a+ ++ f ++vepl+ Mapoly0105s0006.1.p 5 LPRANVKRIVKAKLLELAaahygdeKtsrdlpIHKDALLAFSESAKIFIHYLSATANDICRESKRQTINAEDVLRAVEEIEFGEFVEPLR 94 888999999987664322111222232233336778888899************************************************ PP NF-YB 85 vylkkyrelegek 97 l+ yre +++k Mapoly0105s0006.1.p 95 SALEVYREENQNK 107 ********88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.64E-25 | 5 | 111 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.5E-36 | 5 | 162 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-9 | 37 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSEDLPRANV KRIVKAKLLE LAAAHYGDEK TSRDLPIHKD ALLAFSESAK IFIHYLSATA 60 NDICRESKRQ TINAEDVLRA VEEIEFGEFV EPLRSALEVY REENQNKKAQ RGFAANGGKR 120 KRRASDISAL NGNEDGDEAD NQGEEDEGEG EDLEDDKEEE ADGEDGSDTS S* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366136.1 | 2e-45 | DNA polymerase epsilon subunit 3-like | ||||
Refseq | XP_024366137.1 | 2e-45 | DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A176WQI9 | 1e-118 | A0A176WQI9_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WDF5 | 1e-118 | A0A2R6WDF5_MARPO; Uncharacterized protein | ||||
STRING | PP1S217_34V6.1 | 8e-45 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7862 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-33 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0105s0006.1.p |