PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0095s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | GATA | ||||||||
Protein Properties | Length: 669aa MW: 72652.4 Da PI: 7.1978 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 39 | 1.1e-12 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C ++TplWR+gp ++ LCnaCG ++r kg+ Mapoly0095s0046.1.p 7 CCHCFISTTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99**************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-7 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-9 | 5 | 44 | No hit | No description |
CDD | cd00202 | 3.60E-13 | 6 | 54 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.449 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.5E-11 | 7 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-10 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 2.5E-7 | 316 | 400 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MGKQGPCCHC FISTTPLWRN GPPEKPVLCN ACGSRWRTKG TLQNYMPMHS GGFSANTESS 60 ADLKWSRGKK GSHKHEHRSH KRKEPCDGRA ERDSTQNRSA DQSLSKGYEE DTVSRSCSGS 120 GMCGSEGSVK RGSFPPKDLP VLGNLLVGFG WEVPAVPQKT RSTTSTRRRT ACDVLTRIAR 180 SFSSPTVDPL LIAPPAPGAS SDAVLVEYNK PSLVAVEIGL GSVFVRQCVS LAEEPESESS 240 LFLVDSRGNE SFNGLGHSES GSGIPFIQDF HGIDRGSVYR GKDKAKQVPR KLDAGRLHND 300 KNLVPNKALL ENFPYNKRDV LQSYQSPLVF LEMKDIVNFD TFTGLLTEQE QGQLMQFVSS 360 ADVARIPESL KSMFSSDQFD GALANFQHLL SEGMFDVSEL SSSPRVLQHF QQLLQLPELT 420 KSGWLERCSQ LQNRNKRRGS VDSTKVNSTK ETNKEKMKAS HVPGAASSGS SGFSGAKLPV 480 GHASEKSGEE HKPTKSLSFR GPAISATSTL YNTNPVKHGL NIKPETGSSS NEAVATEAGV 540 NTEGPCFPGN SPFLSTAERE RAIGDEYNLD MGVLDCSETD SLLYNLPNPM SFQQAELLPQ 600 PSWEKKSMKE EEGDVNQLES GGLIMSNTWH MDPNPAEWGL FWNNSSSCVG PGQALPSGAG 660 LIPGRMLM* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WG12 | 0.0 | A0A2R6WG12_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 6e-25 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0095s0046.1.p |