PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0093s0018.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 273aa    MW: 31143.6 Da    PI: 7.3648
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0093s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.21.3e-338105199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkCa dC lap fp +qp++fan+h+lFG++n+l+l+++ +++  ed+m+s+++e++ r rdPv+Ga+g+++ lq++ e+l
  Mapoly0093s0018.1.p   8 ACAACKFQRRKCAVDCLLAPWFPPDQPRRFANAHRLFGVANILRLIRE-NRSSVEDLMKSVCFESDTRERDPVNGAYGTLRLLQREAERL 96 
                          7***********************************************.88899************************************ PP

               DUF260  91 kaelallke 99 
                          +++  +l e
  Mapoly0093s0018.1.p  97 EEDRTALSE 105
                          *99887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2227107IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-318102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGSPPNAACA ACKFQRRKCA VDCLLAPWFP PDQPRRFANA HRLFGVANIL RLIRENRSSV  60
EDLMKSVCFE SDTRERDPVN GAYGTLRLLQ REAERLEEDR TALSERLRIL LLEDAAANNV  120
NNAPHTHTAY NAVPPEYYAH ARPTQVAFTE ATPALQDNDV YHMQHHHHQH QQQQHQHHQH  180
HQQQQQPHQQ QQQLHYMQMP QHQMPSLEYF VNFNASGGFT PVQATDASTS HPLMQLTDRS  240
AEVPLHRASS SYTGTAARDF LSLTNNSNSR FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2561089113LOB family transfactor Ramosa2.1
5ly0_B1e-2561089113LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WGE80.0A0A2R6WGE8_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-26LOB domain-containing protein 22