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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0089s0067.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 408aa MW: 44711.1 Da PI: 9.2045 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 2e-05 | 177 | 198 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+Cg++Fs + L+ H + H Mapoly0089s0067.1.p 177 CPKCGETFSKAEALEAHHISqH 198 *****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.683 | 175 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 177 | 198 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 4.1E-16 | 200 | 406 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 7.58E-24 | 200 | 406 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MPSSWTSWKR ALSCKTDRDQ VIEPHSMIPP SSKSSVGMKS KKHYSARSCS RSLLSLRDVI 60 HGNTRVVHKQ SSPRSVATSD DCLRQVSPDL SYCDTRSSSG GTPSEVGSVF GRSNSRSGSL 120 TSTPLSHASY VFKGTPLRKL SGCYDCNMAY ETLDSMQLVY REGSLHGSYC GSPKAGCPKC 180 GETFSKAEAL EAHHISQHAV TELNKGDSSR NVVEIIFRTS WLKKELPCGK IERILKVHNT 240 QRIVAKFEEY RDAVKARAAK MTKKHPRCMA DGNELLRFYG TFLQCQLGAH GASNLCLMPN 300 CHCCQLIRSG FHAKKEAGRG IYTTATSGKA HDSIALPEDD LKGKRAMLVC RVIAGRTHKA 360 LDNEDLTFLP TGYDSIAGES GPYANIDELL VFSSRAVLPC FVVIYKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002974384.2 | 1e-113 | uncharacterized protein LOC9658046 | ||||
TrEMBL | A0A176VX56 | 0.0 | A0A176VX56_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WHX0 | 0.0 | A0A2R6WHX0_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 2e-99 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0089s0067.1.p |