PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0076s0039.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 702aa    MW: 73391.1 Da    PI: 8.014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0076s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37e-07431452223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Mapoly0076s0039.1.p 431 FCEICGKGFKRDANLRMHMRGH 452
                          6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-5427454No hitNo description
PROSITE profilePS5015712.113430457IPR007087Zinc finger, C2H2
SMARTSM003550.0026430452IPR015880Zinc finger, C2H2-like
PfamPF128743.6E-4431452No hitNo description
PROSITE patternPS000280432452IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5432456IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558480513IPR015880Zinc finger, C2H2-like
SMARTSM0035543518540IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MQQGGGQGSE GRHPSSPRGA GGGGGGGGGG GNLNKFSLLG QQLTYAQQQN PAPPSNMGFS  60
LGVHPQQQQV QNHQSHSQAF AQAQTMSGGG GGNERGYANF LQSPGVVGGG GPSFNQNNNQ  120
NLAHFMSQVP QSGQDLFNKN NMAMGLQGSQ GQEAIMSALQ IIQQKIVHLQ AIVPYLASGQ  180
AQGAGNNQAQ QQQTAAASTI NMINQLAAVA TSMLPCQAQA PQQSPSVPNH QQQGPMGSNN  240
FPGPPNNNQL SEIIQHLGES IPPQAFNFFQ QQGPPSMNNP AMGNSMASGF SGMQGNGSNN  300
NLAATLPGQL GAGLVGGLSG VFGCDGGNGN PNSGQNLRNK ELGSGLSNQM GNGIARNTLG  360
TAGGGMESSV MSNRPSSHSS MANSPPQMDE DGGRRRARDE DDDGEGEKLD PSEYELIEMD  420
AIEILAEHTH FCEICGKGFK RDANLRMHMR GHGDEYKTPA ALARPDKAVH DQAAVKERRY  480
SCPYAGCKRN KKHRKFAPLK TMLCVKNHYR RSHCPKMLAC QKCKSKKFSV VADLKTHEKH  540
CGCDKWQCSC GTTFSRKDKL LGHIALFQGH TPAVPLGDVD GHRELDSIDL SSSNPNLVQQ  600
QQQQSVNNSS GYNLSGNSSG MGSGMGLSGL SSGMGGGGNG NSLGHVMTGM HGRIADESDG  660
TPSNSYSGAG SSLLPQSSML SNLFTSNFME GSNGGSSAHL H*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WLT60.0A0A2R6WLT6_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-87C2H2 family protein