PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0075s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C3H | ||||||||
Protein Properties | Length: 817aa MW: 89830.8 Da PI: 4.8115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 85 | 106 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ff++ G+C G++C+F+Hg Mapoly0075s0060.1.p 85 IPCYFFSQ-GFCAKGEKCTFMHG 106 58******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.685 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.007 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.8E-12 | 7 | 61 | No hit | No description |
PROSITE profile | PS50103 | 9.235 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.33 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.779 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 81 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 82 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-5 | 84 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-5 | 86 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MDEEQLKKNT DCVYFLASPL TCKKGNDCEF RHSESARVNP RDCRYWLGGN CLNWDCPFRH 60 PPLEGRPTVA ANAAPIPGVA NKSRIPCYFF SQGFCAKGEK CTFMHGTPSL APKSSAPQRP 120 VRSGPASAIE SNDKESVPAA NGVAAKPNIE VTLETQAPAE TRPAHVGGVQ TSPRKEVRTY 180 PGTGANQNGG ARGRSEGPSS GHVGSGRLRI RQVQPGDDRV QNGMEQDEWW EESSPGFDVL 240 VDDGPEQSRY PDDSEFQSVG EGGLETGKGG SRSRVRSMRM ADDIEQYDYD YPHQYDHPYE 300 GNASYEHGGY EYSVHEQQGG YDPSGAYEHM GQRGGYSDRG GPDEMLARER LGLPMEVDVR 360 SGGGNNDHRS RLGSVKRRRP DGGPQHSSEN HSRRQRTEMP MDEYQHHQRQ QEDQQKQHEL 420 QLRQELFIQS GLRYNNHFSG RRQFEKNPVE TAGVARRALQ DIGAEVAIST TDRVQSKPGL 480 KGRSVVDNSR SGLKESEHSR ISKVSDSLGE SEGRNYMDLE GNRKTEKEVR KDPSTFAGPK 540 TLAQIKAEKR KGAVEGSSKK ESLNGSKLPL QTSSASKGAA GRSQQQSPAI FVGDAMSGDA 600 SIEERKIRLD KVVPSEVKKL TAFEGPKSLS AILKEKRKVE PEGDAKPEET SRDHLQRISP 660 SGSTMVAATG VDTGSAVESE LREVDTGIGT DLDADVEDGE LLSDDDGALK SRNDMNDEDR 720 NTYSLDRGAV ELQGTSSRDS QWQHDETANA MQTVEGGEDD IIEEPVHGSD YGDVQEDYEE 780 EVRELDVDHD EDEEAFVGLD DEEEDDFAKK LGGFFS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WM84 | 0.0 | A0A2R6WM84_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2455 | 12 | 20 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0075s0060.1.p |